Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o23
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical p...    27   3.7  
Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical p...    27   3.7  
Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical p...    27   3.7  
Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical p...    27   3.7  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   5.0  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    27   5.0  
Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    26   8.7  

>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 255 EDCLSHILHCLSCEIIRLVGIYEAXSCYKSVHFSKPSILINLFIFTVILK 106
           +D   ++   + CEI   +        Y + H S   +LINLF FT++ +
Sbjct: 10  DDKTRNLTEPVLCEIANSLSTVTKALTYITPHISFLCVLINLFHFTILTR 59


>Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 390 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 298
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 424 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 454


>Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 390 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 298
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 594 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 624


>Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 390 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 298
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 424 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 454


>Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 390 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 298
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 594 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 624


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 174 YKSVHFSKPSILINLFIFTVILK 106
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 174 YKSVHFSKPSILINLFIFTVILK 106
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 160 MNRFITRXCFVNSNQADDFTRQTVQDVRQAVLSSASLR--PRIXEALERINFRF 315
           +N+FI +   +  +   D  RQ  +    ++ S   LR  P + +AL+ +NF+F
Sbjct: 178 LNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQF 231


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 160 MNRFITRXCFVNSNQADDFTRQTVQDVRQAVLSSASLR--PRIXEALERINFRF 315
           +N+FI +   +  +   D  RQ  +    ++ S   LR  P + +AL+ +NF+F
Sbjct: 203 LNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQF 256


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 160 MNRFITRXCFVNSNQADDFTRQTVQDVRQAVLSSASLR--PRIXEALERINFRF 315
           +N+FI +   +  +   D  RQ  +    ++ S   LR  P + +AL+ +NF+F
Sbjct: 587 LNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQF 640


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 32   HHLAPFIPTSKSIFFH*L*FENYMY 106
            +H +PF+P   SIF H   F +Y+Y
Sbjct: 1155 YHDSPFLPPPFSIFAHVYHFIDYLY 1179


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  HHLAPFIPTSKSIFFH*L*FENYMY 106
           +H +PF+P   SIF H   F +Y+Y
Sbjct: 871 YHDSPFLPPPFSIFAHVYHFIDYLY 895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,536
Number of Sequences: 27780
Number of extensions: 157947
Number of successful extensions: 335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)