Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o19
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.62 
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   1.9  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    27   3.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.3  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   5.8  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -3

Query: 303 LAIFLDSISCSLLGFFRNLSSLSRSTIW 220
           ++I+ + +SC+L+GF  N+S+++   +W
Sbjct: 97  VSIYRNQLSCALVGFVSNVSAVAAFILW 124


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 473 LLHSLCFYFHQRSLSFKIGKQNFTRIFQSLEFLQYLI 583
           L+H+ C      +L  KIG +N TRI+ +L  L  LI
Sbjct: 211 LVHAFCNSMGLPTLYGKIGNRNQTRIYYTLLLLGVLI 247


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 316 ITFWEIMVVLLFGGAMICFFCRSPQVFPGWGDKIAAHFGVESKFVRDSA 462
           +TF EI  ++LFGGA    F +S        DKI+ +   +   V+ +A
Sbjct: 360 LTFSEINSIILFGGASRIPFIQSTLADYVSSDKISKNVNADEASVKGAA 408


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 396 SRMG**DCSTFWRGEQICSRLSPSYACYIPYVSTSINAHFLSKLE 530
           S+ G  +  T +RGE++  R      CY  Y++ S N   +S LE
Sbjct: 116 SQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLS-NVQHISYLE 159


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 448 VRDSALAMLVTFLMFLLPSTLTFFQNWKAKFHEDLPKSRVSSVLDWPELRAHMPFSY 618
           V     A + T++   L S    F  W+   HE  PK+R  S LDW  L   + FS+
Sbjct: 20  VNKGGCAAVATWIKEKLDSLGPQFAEWQN--HELHPKTRDVSTLDWIFLVDILNFSF 74


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 119 KYSGAVGYAVINSPLKTKLVAVPTKVP 39
           K SG     + NSP+K+KL A+P+  P
Sbjct: 155 KVSGKYPSVIDNSPVKSKLGALPSARP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,808
Number of Sequences: 5004
Number of extensions: 59883
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)