Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o19
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483...    71   9e-13
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    66   2e-11
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289...    28   6.0  
10_01_0300 - 3257584-3258825                                           28   7.9  
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099...    28   7.9  
02_05_0210 - 26795630-26795757,26797987-26798617                       28   7.9  

>09_04_0563 +
           18546967-18547407,18547503-18548007,18548271-18548314,
           18548639-18548734,18548830-18549340,18549506-18549540
          Length = 543

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 1/221 (0%)
 Frame = +1

Query: 16  FSATIGGIGTLVGTATNLVFKGLFMTAYPTAPEYLSFPLFSAFSIPMMILLEASTYLYLT 195
           +++ IGG+ TL GT  N++  G++ T +P  P  ++F  + +F +P+ ++L  + +  L 
Sbjct: 229 YASAIGGMATLTGTGVNIILVGMWSTYFPEQPP-ITFSSWMSFGLPLALVLFVALWATLC 287

Query: 196 IVYFGFLRPNSXXXXXXXXXXXXXXXXRNAIEEDCKRIGTITFWEIMVVLLFGGAMICFF 375
           ++Y                        R+ +  +   +G + F E MV+ +FGG ++ + 
Sbjct: 288 VLYCS----------KNTGRALSAYLDRSHLRRELSLLGPMAFAEKMVLAVFGGLIVLWM 337

Query: 376 CRS-PQVFPGWGDKIAAHFGVESKFVRDSALAMLVTFLMFLLPSTLTFFQNWKAKFHEDL 552
            RS     PGWG       G       D  + +++  L+F++PS                
Sbjct: 338 TRSLTDDIPGWGSLFHGEVG-------DGTVTIMMATLLFIIPSG--------------- 375

Query: 553 PKSRVSSVLDWPELRAHMPFSYMFLLGGGFALSMAAKSSGL 675
            K+    ++DW + R  + ++ + LLG GFA++   ++SGL
Sbjct: 376 -KNDGEKLMDWGKCR-RLQWNIILLLGAGFAIADGFRASGL 414


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 1/221 (0%)
 Frame = +1

Query: 16  FSATIGGIGTLVGTATNLVFKGLFMTAYPTAPEYLSFPLFSAFSIPMMILLEASTYLYLT 195
           +++ IGG+ TL GT  N++  G++ + +P     ++F  + +F +PM I+L  + +L L 
Sbjct: 205 YASAIGGMATLTGTGVNIILVGMWSSYFPEQRP-ITFSSWMSFGLPMAIILFLALWLTLC 263

Query: 196 IVYFGFLRPNSXXXXXXXXXXXXXXXXRNAIEEDCKRIGTITFWEIMVVLLFGGAMICFF 375
           ++Y                        R+ +  +   +G + F E MV+ +FGG ++ + 
Sbjct: 264 LMYCS----------NNTAKALSAYLDRSHLRRELSLLGPMAFAEKMVLAVFGGLVVLWM 313

Query: 376 CRS-PQVFPGWGDKIAAHFGVESKFVRDSALAMLVTFLMFLLPSTLTFFQNWKAKFHEDL 552
            R+     PGWG  +  H       V D  + +++  L+F++PS                
Sbjct: 314 SRNITDNIPGWG--VLFH-----NKVGDGTVTIMMATLLFIIPSG--------------- 351

Query: 553 PKSRVSSVLDWPELRAHMPFSYMFLLGGGFALSMAAKSSGL 675
            K     ++DW + +  + ++ + LLG GFA++   K+SGL
Sbjct: 352 -KREGEKLMDWNKCKK-IQWNIILLLGAGFAIADGFKTSGL 390


>02_04_0370 -
           22427559-22427590,22427783-22427964,22428754-22428939,
           22429125-22429280,22429366-22429589,22430933-22430968,
           22431390-22431539
          Length = 321

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 94  AYPTAPEYLSFPLFSAFSIPMMILLEASTYLYLTIVYFG 210
           AYP   ++ + PLF+ F + +  LL+   + +L   Y G
Sbjct: 20  AYPAYRDFFALPLFAVFFLVVRYLLDCFVFEWLVREYNG 58


>10_01_0300 - 3257584-3258825
          Length = 413

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 80  DYL*LRILPLRSICHFH 130
           DY+ LR+ PLR + HFH
Sbjct: 266 DYVYLRVTPLRGVHHFH 282


>03_06_0036 +
           31208993-31209391,31209616-31209693,31209881-31209946,
           31211556-31211621,31211815-31211865,31212635-31212928
          Length = 317

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 461 AESRTNLLSTPKCAAILSPHP 399
           A S T  +++P CA+ L+PHP
Sbjct: 44  AASTTTAVASPTCASYLAPHP 64


>02_05_0210 - 26795630-26795757,26797987-26798617
          Length = 252

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 605 CRLATCSSWVAALLFPWQQNHR 670
           CR +  + W+A  +FPW  N R
Sbjct: 206 CRASPATPWLALAMFPWDGNVR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,865
Number of Sequences: 37544
Number of extensions: 387039
Number of successful extensions: 1041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)