Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20o18
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 34 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.84
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.5
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 28 1.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.5
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 27 2.6
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 27 3.4
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 7.9
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 7.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 7.9
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.9
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 400 KGISENVVVADIPN-VHAVTRIQNDTQVLAPLNNNDARTNEIIPNE 534
KGI NVV+ DI N H + ++N + ++NN TN IPN+
Sbjct: 852 KGIESNVVIKDISNQTHEINSVENKAET---VSNNSKITNFDIPND 894
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 199 SVPTVHKTGVSKSEHNI-RQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVD- 372
S PT + +S ++I Q + +K SFN D +N+ S D+P D
Sbjct: 3 SSPTESEILPKESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQDP 62
Query: 373 LKNFMASCFKGISEN 417
+ MAS G SEN
Sbjct: 63 ISPNMASNESGNSEN 77
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.1
Identities = 31/137 (22%), Positives = 54/137 (39%)
Frame = +1
Query: 184 NELPGSVPTVHKTGVSKSEHNIRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPAT 363
+ L G T VS + N+ + ++ + + KSI P + ++L KD
Sbjct: 384 DSLGGKTKTSMIVTVSSTNTNLEETISTLEYAARAKSIRNKPQNNQLVFRKVLIKDLVLD 443
Query: 364 FVDLKNFMASCFKGISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEVIV 543
LKN + + K V +A+ + R+QN L AR E++ V
Sbjct: 444 IERLKNDLNATRK--KNGVYLAESTYKELMDRVQNKDL----LCQEQARKLEVLDLNVKS 497
Query: 544 TAKTENKLSKLGTDKKK 594
+ + +SK + KK
Sbjct: 498 SREQLQYVSKSNQEHKK 514
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 550 KTENKLSKLGTDKKKTSGGLSERSDLVLAQRDSISSIGS 666
K++ L L KKK + RS+L + DS+ SIG+
Sbjct: 113 KSQLGLDVLAVQKKKEKSQVEGRSELSQVENDSLESIGN 151
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 226 VSKSEHNIRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVDLKNFMASCFKG 405
+SK+ + + DV N + SI F P S ++IL +DP T + S +
Sbjct: 250 MSKNSSRVLGTSSYCDV-NGMDSIIFEPTESSALTDDILFAEDPGTESIISTSRKSSYSS 308
Query: 406 ISEN 417
+E+
Sbjct: 309 TTES 312
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 406 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 525
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.6
Identities = 26/94 (27%), Positives = 38/94 (40%)
Frame = +1
Query: 271 DVSNALKSISFNPNADSRANNEILSKDDPATFVDLKNFMASCFKGISENVVVADIPNVHA 450
DVSN SI N N D + E D VD + GI+ NV +
Sbjct: 481 DVSNGSPSIITNKNYDPSHDVE----GDIGLSVDDATDAVTDADGIATNVAGSVSSGSAG 536
Query: 451 VTRIQNDTQVLAPLNNNDARTNEIIPNEVIVTAK 552
+ + + APL + T++IIP + + T K
Sbjct: 537 IPKFTVVEGIAAPLPMANVDTDKIIPKQFLKTIK 570
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 692 ESYKFCKTFEPILEMESLCAKTKSDLSDRPPEVFFLSVPSFD-SLFSVFAVTMTSFGMIS 516
E+Y F ++ E LE+E K +S +V +++ F + F+V ++ T F S
Sbjct: 405 ETYYFRRSIETSLELEEYYTKVSPWMSSIVDDVMYVTKQVFQRAFFTVSSLFFTRFVNES 464
Query: 515 LV 510
L+
Sbjct: 465 LI 466
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 539 MTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLI--PLKHEAIKFFKST 366
M F S+ + L+ + + +SF I + FG S+ TF L+ L A+ F T
Sbjct: 1 MNHFSKFSVTKRLLILEVLFSAISFGISIYIKVFGRSSIVTFFLLCFHLVPNALFLFPWT 60
Query: 365 KVAGSSFDKISLFALESA 312
+ +SF ++F L S+
Sbjct: 61 -IITTSFVDANVFTLLSS 77
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = -3
Query: 640 FVPKPNQIFPIGHQK-----FSSYRYQVSTAYFRF 551
F P+PN IGH K F RY Y RF
Sbjct: 267 FPPEPNGYLHIGHSKAIAVNFGFARYHNGVCYLRF 301
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -2
Query: 662 PILEMESLCAKTKSDLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGA 483
PI+E ++D S R + ++++ SFD + + ++ ++ R L KG
Sbjct: 201 PIMEAFGNAKTIRNDNSSRFGK--YVTI-SFDENLLITGANVNTY-LLERSRVVSLLKGE 256
Query: 482 KTWVSFWILVTACT 441
+ + F+ L+T CT
Sbjct: 257 RNYHIFYQLITGCT 270
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 566 SLFSVFAVTMTSFGMISLVRASLLF 492
SLF +F+++ + GM+ V ++L+F
Sbjct: 66 SLFGIFSISFSVLGMLPSVASTLVF 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,583
Number of Sequences: 5004
Number of extensions: 58043
Number of successful extensions: 181
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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