Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o18
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899...    30   2.0  
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    29   2.6  
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411...    28   6.1  
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944...    28   8.1  

>01_07_0101 +
           41086735-41086809,41088634-41088721,41089727-41089923,
           41090077-41090266,41090469-41090860,41091390-41091965
          Length = 505

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 565 LSKLGTDKKKTSGGLSERSDLVLAQRD 645
           +S++G+DK ++ GGL  + D+V+ QRD
Sbjct: 49  VSRVGSDKSRSHGGLDSKKDVVI-QRD 74


>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
            26475149-26475260,26475405-26475463,26475559-26475633,
            26475734-26475832,26476128-26476343,26476426-26476500,
            26476583-26476670,26476757-26476902,26477240-26477347,
            26477417-26478436,26478437-26478715,26479471-26480520,
            26480636-26480692,26480780-26480837,26481379-26481458,
            26481598-26481654,26481764-26481833,26481967-26482202,
            26482341-26482445,26482534-26482680,26482758-26482823,
            26482916-26482979,26484040-26484200,26484308-26484400,
            26484487-26484600,26484684-26484803,26484893-26484976,
            26485061-26485216,26485389-26485811
          Length = 1885

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
 Frame = +1

Query: 271  DVSNALKSISFNPNADSRANNEILSK--DDPATFVDLKNFMASCFKGISENVVVADIPNV 444
            D+ N+ K + +N + +      ILS   ++      ++N   S  K  +E +   D  +V
Sbjct: 757  DLKNSTKVLEYNSSRNLLDKGIILSGQLENECGLNSVQNDEISLVKENAEKMYGHDEISV 816

Query: 445  HAVTRIQNDT-QVLAPLNNNDARTNEIIPNEVIVTAKTENKLSKLGTDKKKTSGGLSERS 621
            +    I + + Q+L     +    NE +  ++I+ A+   KLS++   K      LSE  
Sbjct: 817  YRQNEILHSSEQLLQDELTHIKSLNEGLKEKLIIMAEESTKLSEIIVAKDVEIATLSEEW 876

Query: 622  DLVLAQRDSISSIGSNVLQNLYDS 693
            +  +    S  + G + L + Y +
Sbjct: 877  ESAIVDLTSFLTDGCSSLDDAYQN 900


>09_02_0085 +
           4111333-4111492,4114766-4116044,4116113-4116206,
           4116297-4116545
          Length = 593

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 178 SVNELPGSVPTVHKTGVSKSEHNIRQIVTVKDVSNAL 288
           S   LPG++P +  TG+  S+  ++ +   K+ S+ L
Sbjct: 115 SATILPGALPAILYTGIDASKEQVQNVAFAKNPSDPL 151


>11_06_0543 +
           24792110-24792229,24792316-24792521,24793770-24794462,
           24794538-24794717,24794793-24795084,24795166-24795375
          Length = 566

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 545 LQKPKISCRNLVPIRRKLLVAYRKDLIWFWHKETPFRVLVQTFC 676
           ++KP+ + ++L+ I  K LV Y+K  I     E  F+V    +C
Sbjct: 421 MRKPQANYQSLIDILDKALVKYKKKSIRHAPCENKFQVWCHPYC 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,932
Number of Sequences: 37544
Number of extensions: 328690
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)