Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o18
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical ...    32   0.45 
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    29   4.2  
U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 620 DLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTA 447
           D+SD      + SV S   LF V  +  T   M  LV + LL++  K+   FW L  +T 
Sbjct: 58  DISDSEKNWLYYSVVS---LFVVSTIGATILTMSFLVLSILLWRHFKSMRFFWFLTQLTT 114

Query: 446 CTFGISATTTFSLIP 402
             F ISA   F  IP
Sbjct: 115 SAFVISAANLFINIP 129


>AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical
           protein F58F6.5 protein.
          Length = 109

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 566 SLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTACTFGISATTTFSLIP 402
           SLF V  V  T   +  LV + LL++  K+   FW L  +T   F ISA+  F  IP
Sbjct: 31  SLFVVSTVVATILTLSFLVLSILLWRNFKSMRFFWFLTQLTTSAFIISASNLFINIP 87


>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 233 LETPVL*TVGTDPGNSFTDDGPALSFSDTSFALSLLFTII 114
           L TP+    GTD   SFTD   A+    T+ AL L+  +I
Sbjct: 402 LSTPICGFTGTDCPKSFTDQYLAIILGCTAAALVLIIAVI 441


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 476 WVSFWILVTACTFGISATTTFSLIPLKHE--AIKFFKSTKVAGSSFDKISLFALESAFGL 303
           W    I++      I  +  F   PL     +IKF + +  AGS+   I+LF  +  F +
Sbjct: 336 WTVSLIIIVHLILKIFISRIFEKNPLLTNIYSIKFLQFSSFAGSAVIMITLFVTKFHFDI 395

Query: 302 KLIDFKAFDTSLTVT 258
           +LI + A    L++T
Sbjct: 396 QLILYAAIFAFLSLT 410


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
            B0412.3 protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
 Frame = +1

Query: 247  IRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVDLKNFMASCFKGISENVVV 426
            I Q++ + DVS  LK+  F P+A+  AN+      DP   + L +   S  K + + VV+
Sbjct: 626  IEQVIRLNDVSVHLKAKKFPPDANQTANDADCLIYDP---IHLGSVEVSKSKPL-QRVVL 681

Query: 427  ADIPNVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEVIVTAKTEN----KLSKLGTDKKK 594
             D+ N      I   T+V   L N      E   N +      EN    +  K+G  K  
Sbjct: 682  LDLKNAKQ-NWIVTVTKVTLDLGNAIRGNIEFDENALNRNCHVENIIGLEFLKIGVAKTS 740

Query: 595  TSGGLSERSDLVLAQ 639
                  E+ D ++ +
Sbjct: 741  VKLESVEKVDCLIGE 755


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 316 DSRANNEILSKDDP-ATFVDLKNFMASCFKGISENVVVADIPNVHAVTRIQNDTQVLAPL 492
           D   +NE  S+ +P AT  +  +   +  + ISE    + +  +  ++R+ N   +   L
Sbjct: 83  DIGKDNEYFSRRNPRATNSEFYSHNINETEYISEEFK-SSLIQMQMISRVTNGIYLQHGL 141

Query: 493 NNNDARTNEIIPNEVIVTAKTENKLSKLGTDK 588
           +N   +++++IP  +     T  ++S + TDK
Sbjct: 142 SNGSIKSDDLIPELLHFGTITPTQISAINTDK 173


>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 584 SVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLI 405
           S+  F  LFSV  +T+ S     +V  + L    + W+S   L     FG+   T     
Sbjct: 178 SIEIFAKLFSVVLLTVMSLERYIIV-CTRLRHIYRAWMSLVPLAVGTIFGVLVPTIIHYF 236

Query: 404 PLKHEAIKF 378
            L+H ++ F
Sbjct: 237 YLQHFSVPF 245


>Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 26/107 (24%), Positives = 44/107 (41%)
 Frame = -2

Query: 563 LFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLIPLKHEAI 384
           L S+  +  T F +I L R S+      T  +F + +  C           L PL  E  
Sbjct: 39  LISIIGILPTIFHIIVLSRKSMR---TLTINAFLLGIGICDLARMMFIIMVLGPLYTEHF 95

Query: 383 KFFKSTKVAGSSFDKISLFALESAFGLKLIDFKAFDTSLTVTIWRML 243
              +  +    ++    LFAL S F  KL+++ +   ++ + I R L
Sbjct: 96  SHLEHPECMSPNYYSTILFALISGFTGKLVEYLSIWLAVAMAIIRSL 142


>Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 26/107 (24%), Positives = 44/107 (41%)
 Frame = -2

Query: 563 LFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLIPLKHEAI 384
           L S+  +  T F +I L R S+      T  +F + +  C           L PL  E  
Sbjct: 39  LISIIGILPTIFHIIVLSRKSMR---TLTINAFLLGIGICDLARMMFIIMVLGPLYTEHF 95

Query: 383 KFFKSTKVAGSSFDKISLFALESAFGLKLIDFKAFDTSLTVTIWRML 243
              +  +    ++    LFAL S F  KL+++ +   ++ + I R L
Sbjct: 96  SHLEHPECMSPNYYSTILFALISGFTGKLVEYLSIWLAVAMAIIRSL 142


>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 497 LFKGAKTWVSFWILVTACTFGISATTTFSL 408
           +F+G +    FW+++ +C+ G+  T  F L
Sbjct: 95  IFQGKRWATLFWLIMVSCSLGLLITQVFIL 124


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 379 NFMASCFKGISENVVVADIPNVHAVT 456
           NF ++ FK +SEN+   D+P  + VT
Sbjct: 30  NFYSAQFKKLSENLKTVDLPKNYTVT 55


>Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical
           protein F54B3.2 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 451 VTRIQNDTQVLAPLNNNDARTNEIIP--NEVIVTAKTENKLSKLGTDKKK 594
           V++IQ   + +  LNN  +  +++IP  N  I       +  KLG +K+K
Sbjct: 193 VSKIQKTIEFMLKLNNQTSTYSQLIPYWNPTIFLPPASWQYRKLGEEKEK 242


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 439 NVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEV-IVTAKTENKLSKLGTD 585
           NV A+T IQ D    A   NN+   NE + +E  I+  +  N+  K  T+
Sbjct: 386 NVEAITEIQKDQAEHAKDTNNNNNNNEHLHDEYNIIQTEDNNEEEKHYTE 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,057
Number of Sequences: 27780
Number of extensions: 317549
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)