Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o17
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   2.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.8  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   6.3  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   6.3  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 181 RPQWELYDLRKDPAETNNL 237
           + +WELYDL +D  E  NL
Sbjct: 490 KTEWELYDLSQDKGELENL 508


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 172 YYYRPQWELYDLRKDPAETNNLHGKPSLEEVESNL 276
           ++Y   W  Y + K  + T  L+ KPSLE+V SNL
Sbjct: 632 FFYLNNW--YSV-KPSSFTKGLNNKPSLEDVFSNL 663


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 221  QKPITYMVNHPWRRWSRISENDCRDGSAPPAT 316
            Q+ +   V  P+RR + I+EN   DG+A P T
Sbjct: 1626 QESMNMGVYSPYRRSTEIAENMSMDGNAYPYT 1657


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 256 PGMVYHVSYWFLPDPYEGRRAPTA 185
           PG +  +S  FLP PY G RA  A
Sbjct: 288 PGDIVDISGIFLPTPYTGFRAMRA 311


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 275 SENDCRDGSAPPATRGCVRPTPSW 346
           +EN+  DG A  AT G   P  SW
Sbjct: 611 AENETADGKAQTATDGEAAPKKSW 634


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 157 KTLKQYYYRPQWELYDLRKDPAE---TNNLHGKPSLEEVESNLRERLSRWQRS 306
           +T+K   +  +WEL       AE   +  L+G   LEE ++ LRE  SR + S
Sbjct: 511 ETIKARIWLARWELGKKNYREAELYLSEVLNGDLELEEAKALLRELRSRMEHS 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,407
Number of Sequences: 5004
Number of extensions: 58438
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)