Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o17
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 299 SAPPATRGCVRPTPSWNATLTTP 367
           + P ++ G  + T  W++ LTTP
Sbjct: 392 TGPLSSTGLAQVTGIWHSNLTTP 414


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = -2

Query: 295 IATIVLGDS-TPPPP 254
           +  IVLGDS TPP P
Sbjct: 327 LVNIVLGDSDTPPKP 341


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 179 TGRSGSSTTFVRIRQKPITYMVNHPWRR 262
           TG+S  +   +R  + P+   V HP+R+
Sbjct: 2   TGQSVEAVMSLRALKYPMVVHVYHPYRQ 29


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 179 TGRSGSSTTFVRIRQKPITYMVNHPWRR 262
           TG+S  +   +R  + P+   V HP+R+
Sbjct: 2   TGQSVEAVMSLRALKYPMVVHVYHPYRQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,586
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)