Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20o15
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0467 + 3657320-3657992,3658077-3658342 32 0.34
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 3.1
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 29 4.1
08_02_1470 - 27350173-27350643,27350721-27351167 28 7.2
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 28 7.2
01_01_0206 - 1770622-1771347 28 7.2
05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352 27 9.6
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 27 9.6
01_06_0867 - 32586254-32586574,32586756-32587172 27 9.6
>12_01_0467 + 3657320-3657992,3658077-3658342
Length = 312
Score = 32.3 bits (70), Expect = 0.34
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +1
Query: 355 DRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNS 534
+ + + Q IC+++HS V K A + P + T PS++ +Q
Sbjct: 172 EHVTQTQFICEESHSYLT--LRVPKACSAAPDI-PTSSSWPPTRDIPSSSTQPPPEQAKQ 228
Query: 535 NWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDLPPPP 642
N R+ + +A R AKQ QAHL + +L P PP
Sbjct: 229 N-RRARNKIKKASRRAKQTQAHLYSRFQLGAPPSPP 263
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +1
Query: 445 TEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGG--- 615
T E +N+L K A + +V +++ QK+ E + AIR AK +H A G
Sbjct: 176 TLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIR-AKNAASHNKASGNGH 234
Query: 616 ---KLSDLPPP 639
+ LPPP
Sbjct: 235 AKPRAPHLPPP 245
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -2
Query: 581 AARIAWMNSSCFCRQLLFNCLPLFTLVVDGVAVVLRNLLIKGSASVPAKRCLSTSKGFLF 402
AA+ W+++ + L T+V DG VV R L+K ASV + S F F
Sbjct: 373 AAKATWLSNDIVMFSTKAGEMLLLTVVYDG-RVVQRLDLMKSKASVLSSAVTSIGNSFFF 431
Query: 401 L 399
L
Sbjct: 432 L 432
>08_02_1470 - 27350173-27350643,27350721-27351167
Length = 305
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 454 EPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDLP 633
E +N+L K + + +V + +++ QK+ E + AIRA + A + LP
Sbjct: 173 EALMNELVKLDSIAADGEVKEQRRVQEKRVQKYVEALDAIRAKTKKAAAAPPKARPPHLP 232
Query: 634 PPP 642
P P
Sbjct: 233 PRP 235
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +1
Query: 175 TNKTRGAMQRPANTTPR-KPPVK----ANSAGSGTPKGRXXXXXXXXXXXXXGDACGVCG 339
+NKT+ + R P+ +PPVK G +G CG CG
Sbjct: 157 SNKTKSSEPRAKQPKPQPQPPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACG 216
Query: 340 RHFASDRIAKHQEICKK 390
+ +D +IC+K
Sbjct: 217 ESYGADEFWICCDICEK 233
>01_01_0206 - 1770622-1771347
Length = 241
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 487 ATPSTTKVNKGKQLNSNWRQKHE-EFIQAIRAAKQVQA--HLNAGGKLSDLPPPP 642
ATP+ + S+WR+ E EF A AA V L AGGKL +PP P
Sbjct: 27 ATPAARSDTSLVVVMSSWRRLPEPEFDFANAAAADVAPADRLFAGGKLLPVPPLP 81
>05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352
Length = 236
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 272 PLGVPEPALFAFTGGFLGVVLAGRCIAPR 186
PL P P+ F G LG+++ ++PR
Sbjct: 185 PLSPPPPSYHCFRNGPLGIIIIASILSPR 213
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 340 RHFASDRIAKHQEICKKAHSKK 405
RHF + +H E+C HSK+
Sbjct: 676 RHFCRNNPGEHTELCSNKHSKR 697
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 175 TNKTRGAMQRPANTTPRKPPVKANSAGSGTPKG 273
++K RGA++RPA+ + +A+SAG G P G
Sbjct: 9 SSKRRGAVERPASGAGLQAE-EASSAGPGAPCG 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,938
Number of Sequences: 37544
Number of extensions: 292472
Number of successful extensions: 1037
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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