Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o14
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   1.3  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    24   3.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    22   9.3  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          22   9.3  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    22   9.3  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    22   9.3  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 61   KEKNKSSRGNHSRRQGAQWKRTQG 132
            K K+K S+GNH    G Q  R +G
Sbjct: 1276 KSKSKFSKGNHHSTNGTQSIRGRG 1299


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 40  VLVNRERKEKNKSSRGNHSR 99
           V+V R++ +KNK   GN SR
Sbjct: 565 VMVARKKLKKNKQRLGNQSR 584


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 28  QEKNVLVNRERKEKNKSSRGNHSRRQ 105
           +EK +L  R+R+EK         RR+
Sbjct: 697 EEKRILEERKRREKLDKEEEERRRRE 722


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 114 VEAHPRTCAVVIQ 152
           +E +P+TCAV+I+
Sbjct: 146 IELYPQTCAVLIR 158


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 52  RERKEKNKSSRGNHSRRQGA 111
           ++ +E+N + RG+ ++ QGA
Sbjct: 66  KQHEERNATQRGSDAQTQGA 85


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 158 RLLYYDGTSPWVRFHCAPCLLLWLPRE 78
           R+ ++   SPW+   C+   L +LP +
Sbjct: 107 RMSFWQIPSPWMYTRCSDWPLSYLPNQ 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,143
Number of Sequences: 5004
Number of extensions: 5665
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)