Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o14
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0002 + 10438098-10438586                                         29   0.69 
11_02_0013 + 7350329-7350817                                           28   1.2  
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628...    26   3.7  
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886...    26   4.9  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    26   4.9  
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    26   4.9  
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665...    25   8.5  
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801           25   8.5  

>06_02_0002 + 10438098-10438586
          Length = 162

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 1   VVGKAKGQGQEKNVLVNRERKEKNKSSRGNHSRRQG 108
           V  + +G GQ++ +   RER+ + +  RG      G
Sbjct: 72  VGARGQGSGQQRRIATGRERRRRKRRGRGRRKAAAG 107


>11_02_0013 + 7350329-7350817
          Length = 162

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 1   VVGKAKGQGQEKNVLVNRERKEKNKSSRGNHSRRQG 108
           V  + +G GQ + +   RER+ + +  RG      G
Sbjct: 72  VGARGQGSGQRRRIATGRERRRRKRRGRGRRKAAAG 107


>06_03_1454 -
           30261240-30261470,30261896-30262615,30262700-30262843,
           30262953-30263204,30263542-30263751
          Length = 518

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 10  KAKGQGQEKNVLVNRERKEKNKSSRGNHSRRQGAQWKRTQGLVP 141
           + K +G+ K     R +KE+   +      R    W+R  G +P
Sbjct: 15  EGKRRGRRKKASRRRRKKEEEGEAMPREGTRMAGLWEREVGCLP 58


>04_04_0666 +
           27086568-27086975,27087073-27087477,27088542-27088635,
           27088731-27088768,27088853-27088999,27089167-27089266,
           27090001-27090953,27091512-27091569,27092904-27093022
          Length = 773

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 16  KGQGQEKNVLVNRERKEKNKSSRGNH 93
           K  GQ+ +  V  E+K K+KSSR  H
Sbjct: 29  KSAGQQSSPTVFPEKKGKSKSSRQKH 54


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 31  EKNVLVNRERKEKNKSSRGNHSRRQGAQWKR 123
           +K V  N+E   KNK +R    R QG   K+
Sbjct: 244 DKKVEENKEETPKNKKARSARDRSQGKDKKQ 274


>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 152 LYYDGTSPWVRFHCAPCLLLWLPRED 75
           L Y+G + W+      CL+LWL  +D
Sbjct: 121 LVYEGRAEWMDKGHKKCLILWLRIQD 146


>02_02_0628 +
           12365109-12365150,12366315-12366411,12366489-12366554,
           12367884-12367963,12368051-12368125,12368232-12368381,
           12369816-12369881,12370141-12370206,12370653-12370763,
           12370917-12371003,12371087-12371193,12372141-12372255,
           12372472-12372537,12373521-12373615,12373700-12373880
          Length = 467

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 10  KAKGQGQEKNVLVNRERKEKNKSSRGN 90
           K +G+G  +N LVNR  +  ++  RG+
Sbjct: 425 KGRGEGAARNQLVNRAFEGLSRGGRGS 451


>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
          Length = 721

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 143 DGTSPWVRFHCAPCLLLWLPR 81
           D TSPWV    +P L  WL R
Sbjct: 673 DMTSPWVEDSDSPNLAQWLDR 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,768,168
Number of Sequences: 37544
Number of extensions: 41779
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)