Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o13
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    37   0.002
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    31   0.16 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   0.27 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.63 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.1  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.5  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    28   1.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.4  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   4.5  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +1

Query: 151 ELFQSHSINEIDQVQKKLQYEIERRREELRAMVGERYRDLIHAADTIEDMRVTTASTLNH 330
           E+F++HSI +  Q++K +  +IE +  EL+  V   Y+  I A++ + ++R      L +
Sbjct: 16  EIFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLEKVLQN 75

Query: 331 ISE 339
             E
Sbjct: 76  SYE 78


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +1

Query: 145 PDELFQSHSINEIDQVQKKLQYEIERRREELRAMVGERYRDLIHAADTIEDMRVTTASTL 324
           PDE   S     +D +  +L    E+   EL  +V + Y+D +H    ++    T  STL
Sbjct: 35  PDEFLVSKRFLGLDGLVNELSRLFEQVNNELMLLVKDNYQDFVHLGSRMKSGN-TKVSTL 93

Query: 325 NHISEMMKACQNLHNT 372
             IS + ++ + L N+
Sbjct: 94  --ISSIHRSEEQLKNS 107


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 21/89 (23%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
 Frame = +1

Query: 172 INEIDQVQKKLQYEIERRREELRAMVGERYRDLIHAADTIEDMRVTTASTLNHISEMMKA 351
           ++++   +K +   IER++E     V   YR+L+     +E+M+ + +S+ +    ++++
Sbjct: 586 LSDLKGEKKDVSKNIERKKET----VHNTYRNLMSNRTKLEEMKASLSSSRSR-GNVLES 640

Query: 352 CQNLHNT-HLVGF--KISNAPTPTQSYNV 429
            Q LH + +L GF  ++ +  T  ++Y+V
Sbjct: 641 LQRLHESDNLNGFFGRLGDLATIDEAYDV 669


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +1

Query: 115  MSKSNLLEIVPDELFQSHSINEIDQVQKKLQYEIERRREELRAMVGERYRDLIHAADTIE 294
            + K  LLE+   +  Q+  +NE++   +KL+ +I+   ++ R  + E    L    +   
Sbjct: 891  LQKKKLLEVSSKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEILEANEYLHQLNEWNS 950

Query: 295  DMRVTTASTLNHISE 339
            ++R+  ++    I E
Sbjct: 951  ELRIDVSTKFKCIKE 965


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 91  LIVSIKVKMSKSNLLEIVPDELFQSHSINEIDQVQKKLQYEIERRREELRAMVGERYRDL 270
           LIVS ++K SK++LL+ +       HS+ +I    +KL   I     EL+  + E YR L
Sbjct: 681 LIVS-ELKDSKNSLLDAL------EHSLQDISMSSQKLGNGISSELIELQKDMKESYRQL 733

Query: 271 IHAADTIEDMRVT 309
           +    ++ +++ T
Sbjct: 734 VQELRSLYNLQHT 746


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +1

Query: 106 KVKMSKSNLLEIVPDELFQSHSINEIDQVQKKLQYEIERRREELRAMVGERYRDLIHAAD 285
           ++K+S  N + +  D+  QS +I E DQ+            +E+  ++GE     +H  D
Sbjct: 546 QLKLSSHNSM-LQLDQRIQSINI-EADQIAHACMEYKNNIYKEVAFVLGEIIHFKLHVQD 603

Query: 286 TIEDMRVTTASTLNHIS 336
           ++ED+++     L+ +S
Sbjct: 604 SLEDLKMDYQKELDDLS 620


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 164 LTLSTRLIRYRRSYNMKLKGEE-KNCVLWSGRG 259
           +TLS+ +++ +R YN K K EE K C++    G
Sbjct: 13  VTLSSFILQEQRRYNQKHKNEEGKPCIIQEASG 45


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +1

Query: 355 QNLHNTHLVGFKISNAPT-----PTQSYNVNSNQLHSLS 456
           Q +++T  V  +ISN PT     P  SY  +SN LHS S
Sbjct: 345 QPMYSTASVPQQISNGPTAVNGLPMNSYTPHSNHLHSPS 383


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 136 EIVPDELFQSHSINEIDQVQKKLQYEIERRR 228
           E   D+L Q H IN   ++ ++  +E ERRR
Sbjct: 132 EFPADKLIQDHLINSNGRIPEEWSWEEERRR 162


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +1

Query: 133 LEIVPDELFQSHSINEIDQVQ-KKLQYEIER---RREELRAMVGERYRDLIHAADTIEDM 300
           L +V DEL ++ +   + Q + ++L+ +I +     +E R  V E   DL  +    ED+
Sbjct: 523 LRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNEDL 582

Query: 301 RVTTASTLNHISEMMKACQNLHNTHLVGFK 390
                  +  I+ + K   +L      GFK
Sbjct: 583 SKLEVEKVEEIANLKKELTHLAKQQEFGFK 612


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 397 NAPTPTQSYNVNSNQLHSLSVQLKILMEIPEKIWTCIETEDF 522
           N  T    +  ++  +H +  QL  ++E+PE +  CIE   F
Sbjct: 117 NFLTSISEHYRDAKLMHQVQPQLSSILELPELMNACIERNYF 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,057
Number of Sequences: 5004
Number of extensions: 53037
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)