Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o12
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    31   0.20 
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    29   0.62 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   3.3  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   5.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 489 LHAHELHLQDLWQNI*VWDVASETIPLHPLSETHL 385
           L A +L +Q+ W  I    +A++T+P +P+ E H+
Sbjct: 118 LRASKLQIQNFWNYICFELLANDTVPANPIKEKHV 152


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 528 LEKAQYPEYFKKREQRKKEFVAMWEKEYGK 617
           LE+   P+   +R QR ++  A+WEK+YGK
Sbjct: 286 LEEVDIPKRKNRRGQRARQ--AIWEKKYGK 313


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 441 VWDVASETIPLHPLSETHLL*SYWS-PWHAC 352
           +WD+A   + +  +S+T  +  +WS  WH C
Sbjct: 222 IWDIAEYPLMMGNVSKTTSVNDFWSRDWHVC 252


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 581 FLSLLAFLEIFRILGFLKRMPI 516
           FLS+ AF+ IF + G+   +PI
Sbjct: 313 FLSMAAFISIFNVAGYQTSVPI 334


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 584 LFLSLLAFLEIFRILGFLKRMPI 516
           +FLS++AF+  F I G+   +PI
Sbjct: 312 VFLSMVAFISYFNIAGYQASVPI 334


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 273 YIFRNGILLLKRHVYRYQAVLLRERFDKHA 362
           +I +  +L L RH YR  A  LR+  D+HA
Sbjct: 165 FISQASLLSLIRHEYRGNAKRLRQLRDEHA 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,621
Number of Sequences: 5004
Number of extensions: 52446
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)