Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o12
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0358 + 21345948-21346206,21346467-21346489                       29   4.5  
05_03_0113 + 8526595-8527440,8527662-8528357                           28   7.9  

>01_05_0358 + 21345948-21346206,21346467-21346489
          Length = 93

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 561 KREQRKKEFVAMWEKEYGKPDE 626
           +R +RKK+F AM   + GKPDE
Sbjct: 8   RRRRRKKDFGAMKLSDLGKPDE 29


>05_03_0113 + 8526595-8527440,8527662-8528357
          Length = 513

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 FRSVLRPPIIPTRLMIILKSHYYR-NSKLCKQIFDDS 229
           F +VL P IIP +L +++  HY+    ++ K+ FD++
Sbjct: 336 FVAVLDPTIIPRKLDVVIGDHYFELKFEVEKKGFDEN 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,062
Number of Sequences: 37544
Number of extensions: 309480
Number of successful extensions: 741
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)