Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o12
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    68   7e-12
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    28   5.4  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     28   5.4  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   7.1  
Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    27   9.4  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
 Frame = +3

Query: 318 RYQAVLLRERFDKHAKETNMIKANXXXXXXXXXXXXXQHPIPKYFATSPGGVAHERVVTP 497
           R+Q  ++R RFD +A E +  K+              +H  P  FA  PGG +++R    
Sbjct: 41  RFQKCIIRARFDANADEVDTRKSQILLADGCRQLWEKRHFKPFRFALDPGGSSYDRERES 100

Query: 498 PDWVLD--YWHPLEKAQYPEYFKKREQRKKEFVAMWEK 605
           PD ++D   W   E+ Q+P YF  REQRKKE +  W K
Sbjct: 101 PDEIVDSDQWTLAEREQFPYYFNTREQRKKELLTHWAK 138



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 75  THAQKVCSLYKRALRNLEAYY 137
           +H QKV  LYKR LR ++ +Y
Sbjct: 13  SHRQKVTRLYKRCLREVDNWY 33


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 177 FRIIINLVGIIGGRSTLLNYVKPFYKGYRLFEHEF*LLKESAPF 46
           F+I++NL+ ++     LL+Y  PFY   +L ++   L     PF
Sbjct: 340 FKILVNLILVV---KALLSYPLPFYAAVQLLKNNLFLGYPQTPF 380


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 177 FRIIINLVGIIGGRSTLLNYVKPFYKGYRLFEHEF*LLKESAPF 46
           F+I++NL+ ++     LL+Y  PFY   +L ++   L     PF
Sbjct: 340 FKILVNLILVV---KALLSYPLPFYAAVQLLKNNLFLGYPQTPF 380


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 525 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 662
           P+ KA  P Y ++  Q    F AMW +++         H  NC NS
Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 530  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 441
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 525 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 662
           P+ KA  P Y ++  Q    F AMW +++         H  NC NS
Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 530  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 441
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 533 ESPIS*IFQETRAKKERVRCYVGEGVWQAR*ER*ASLDKL 652
           ++PIS +F  TR       C+   GVW+ R +R  S+ KL
Sbjct: 16  KAPISAVFCPTRGSSTAPNCFAIIGVWRRRKKR--SVSKL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,699
Number of Sequences: 27780
Number of extensions: 286487
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)