Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20o09
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 105 3e-23
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 75 5e-14
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 75 5e-14
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 75 5e-14
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 33 0.20
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.1
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.3
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 29 3.3
Z83129-1|CAB63326.1| 84|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 5.8
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 5.8
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 5.8
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 105 bits (252), Expect = 3e-23
Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Frame = +3
Query: 258 LKKNDGNKKSPITTVIKIQRDRGERDYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGK 437
+ N S ++ + + +Y GFA P QV R++VK GFDFTLMVVG SGLGK
Sbjct: 1 MSSRTANSSSRNDESLRTGQHKENPNYWGFANFPNQVFRRAVKNGFDFTLMVVGRSGLGK 60
Query: 438 STLINSLFLGDLYK-NRKIPDVQDRXXXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAI 614
ST IN+LFL ++ N K V L LT+VDTPGFGDA+
Sbjct: 61 STFINTLFLAEINNLNEKESAPTHPHPSTVRVEEKLVKLVENSVSLNLTLVDTPGFGDAV 120
Query: 615 NCEDSWRVCSAYIDEQFRQYFTDESGLNR 701
N W Y++ +F + F +E+ ++R
Sbjct: 121 NNSKCWEPIVNYVESKFFEQFCEETRIDR 149
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 336 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 512
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 79 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 132
Query: 513 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDE 686
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 133 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEE 190
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 336 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 512
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 79 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 132
Query: 513 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDE 686
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 133 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEE 190
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 336 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 512
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 148 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 201
Query: 513 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDE 686
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 202 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEE 259
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 399 FTLMVVGESGLGKSTLINSLFLGDLYKNRKIPDVQD 506
+ + VVG++G GKS+LI+ L + YKN ++QD
Sbjct: 238 YKIYVVGDTGTGKSSLISQLITSE-YKNAFADEIQD 272
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Frame = +3
Query: 405 LMVVGESGLGKSTLINSLFLGDL---YKNRK 488
++++G+SG+GK++L+N +GDL Y NR+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRR 42
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 126 MYH*NFLTPKTKTQNS*SVPNFTMENSDSFAILDINLSDKDKDELKKNDGNKKSPITTVI 305
+YH N T +T + F + +D+F+ ++I++ DK + K +GN+K +TT +
Sbjct: 3 IYH-NCTTDRTMRKMRHEWGTFGIRIADAFSTMNIDVFDKGE----KYNGNEKVELTTTV 57
Query: 306 K 308
K
Sbjct: 58 K 58
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +3
Query: 219 ILDINLSDKDKDELKKNDGNKKSPITTVIKIQRDRGERDYIGFATLPEQVHRKSVK---- 386
+ +IN + +D LKK K+ +T + Q R +RD +GFA+ +++ ++ K
Sbjct: 698 VAEINKLNGLRDALKKTLDGVKAFVTAIGGAQGSRRKRDTVGFAS-NKKIFEEAAKFVGL 756
Query: 387 RGFDFTLM 410
GFD M
Sbjct: 757 TGFDIQAM 764
>Z83129-1|CAB63326.1| 84|Caenorhabditis elegans Hypothetical
protein W06G6.2 protein.
Length = 84
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 667 LNCSSMYAEQTRHESSQLIASPKP 596
LN S Y + T HES +L ++P+P
Sbjct: 6 LNAESQYQDDTDHESRKLSSNPEP 29
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 402 TLMVVGESGLGKSTLINSLF 461
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 402 TLMVVGESGLGKSTLINSLF 461
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 402 TLMVVGESGLGKSTLINSLF 461
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 402 TLMVVGESGLGKSTLINSLF 461
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,056
Number of Sequences: 27780
Number of extensions: 292522
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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