Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o08
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    28   0.075
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.6  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 447 NLNPKTYCNIL-LCRILVYLYSSKMNKVEYSMM 542
           +L  + Y NIL  CRI+VYL +S +N + Y++M
Sbjct: 323 HLEIEKYYNILYFCRIMVYL-NSAINPILYNLM 354


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 295 GFIAESGPDERVHLCHVSTQPKQPTCRCC 209
           G I E    +RVH   V++   +P  R C
Sbjct: 223 GRIVERFTSDRVHAALVTSPRARPLARTC 251


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -1

Query: 190 NNPSVWSFRC 161
           NNP  W F C
Sbjct: 662 NNPGFWLFHC 671


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,566
Number of Sequences: 336
Number of extensions: 3706
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)