Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20o07
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 8e-05
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 41 1e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 4e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.001
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 36 0.004
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.028
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 33 0.049
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.064
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.15
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.45
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 0.90
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 28 1.0
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.4
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 28 1.4
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 27 1.8
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 3.2
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 27 3.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 3.2
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.2
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 4.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.6
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 5.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.4
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 7.4
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 7.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 9.7
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.7
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 174 ETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALH 332
+ + + C IC E L HC CY C+ WL E +S CP CR L+
Sbjct: 77 QKIKKTLECPICTEAL-QRPFTTHCGHTYCYECLLNWLKESKS-CPTCRQKLY 127
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 195 RCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRA 323
+C +CME + C + C++C+ W T ++S+CP CRA
Sbjct: 255 KCSLCME-FIHCPAATECGHIFCWSCINGW-TSKKSECPLCRA 295
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 177 TLAEVFRCFICMEKLVDAHLCPH---CSKLCCYACVRRWLTEQRSQCPHCRA 323
+L+ C IC+E + +C C AC+ +WLT + CP CRA
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +3
Query: 195 RCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLHELVNCRWVEEVT 374
RC IC E A L CS C C+R +L E CP CRA L +EE+
Sbjct: 28 RCLICHEYF-RAPLITSCSHTFCSFCIRDYLRE-HPMCPACRAPEQESRLRKNTILEEIL 85
Query: 375 QQIETMQQT 401
+ + ++ T
Sbjct: 86 ESFKVIRPT 94
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +3
Query: 198 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLHELVNCRWVEEVTQ 377
C +C + +A P C KL C C++ L + +CP+C L + +N + ++ +
Sbjct: 282 CTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQ--R 339
Query: 378 QIETMQQTNTASHREN 425
+IE + ++ S+ +N
Sbjct: 340 EIEAVVKSVLGSNSKN 355
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/63 (20%), Positives = 26/63 (41%)
Frame = +3
Query: 159 EEQIVETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLH 338
E Q + + +C +C + L P+C C C+ + + S CP C +
Sbjct: 626 ETQEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVS 685
Query: 339 ELV 347
+++
Sbjct: 686 DIL 688
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 32.7 bits (71), Expect = 0.049
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 171 VETLAEVFRCFICMEKLVDAHL-CPHCSKLCCYACVRRWLTEQRSQ 305
V + + RC+IC E + + L C HCS C C++R E +
Sbjct: 702 VNAIFKPSRCYICSESVWGSELRCFHCSISCHSRCLKRLFAESEHE 747
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 32.3 bits (70), Expect = 0.064
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 195 RCFICMEKLVDAHLC---PHCSKLCCYACVRRWLTEQRSQCPHCR 320
RC +C+ C C+ C+ +WLT ++ CP CR
Sbjct: 524 RCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +3
Query: 138 DKGNGNGEEQIVETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHC 317
D G E++ +T + +C +C + + C CY C+++ + ++ +CP C
Sbjct: 608 DTGVSTSAEEL-KTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.45
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 198 CFICMEKLV--DAHLCPHCSKLCCYACVRRWLTEQRSQCPHC 317
C IC+E D + C C+ +W+ + R CP C
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 23.4 bits (48), Expect(2) = 0.90
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 198 CFICMEKLVDAHLCPHCSKLCCYACVRRWL 287
C C+E+ A C + C++C+ R++
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFV 243
Score = 23.4 bits (48), Expect(2) = 0.90
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 306 CPHCRAALHLHELVNCRWVEE 368
CP C ++ L ++ RWVE+
Sbjct: 269 CPICWDSIRLRDVHPIRWVED 289
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 246 CSKLCCYACVRRWLTEQRSQCPHCRAAL 329
C + + C+R WL E++ CP CR ++
Sbjct: 328 CGHILHFHCLRNWL-ERQQTCPICRRSV 354
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 198 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCP 311
C IC EK+ + + + CY C++ WL +CP
Sbjct: 257 CKICGEKIKNPAVLS-TGFVFCYPCIQVWLQRHPFKCP 293
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +3
Query: 198 CFICMEKLVDAHLCPHCSKLCCY---ACVRRWLTEQRSQCPHCRAALHL 335
C IC E+ C C R WL+ + CP A LHL
Sbjct: 230 CIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCPVHAATLHL 278
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/45 (17%), Positives = 23/45 (51%)
Frame = +3
Query: 510 LWGGTHSGHTFKPLEEVYEQHVTQIRDEVTQLRRRLMELISLVQD 644
LW H GHT + + + + + E+++L + ++ ++++
Sbjct: 68 LWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLEN 112
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 587 TYLSNMLLIYLFQRFEGVPRMGATPESALMTYTATTRPA 471
T LSN +L Y F G P++ P S + + + PA
Sbjct: 392 TALSNSVLNYDSNNFSGTPQINVVPSSPSKSQSGPSLPA 430
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 369 PLQPSDNSPTHVGVVQLDSEDIGSVAPSTNA 277
P PS +SP+ G V + +V PSTN+
Sbjct: 56 PQPPSSSSPSTTGTVAVPINGANAVYPSTNS 86
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +3
Query: 231 HLCPHCSKLCCYACVRRWLTEQRSQCPHC 317
H H +++ C C ++ + CPHC
Sbjct: 360 HTFEHANRIICGYCAMESFYKKDATCPHC 388
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 87 SPILYQVKCSSNMASRGDKGNGNGEEQIVETLAEVFRCFICMEKL 221
+P LY++ +A GNG+ E+ I ET E+ RC ++L
Sbjct: 201 APNLYKIL--KKLAQELSNGNGDLEKLIAETNTELSRCRFIPDQL 243
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 198 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRS-QCPHCR 320
CFIC E + + + P C+ C+ C R ++ +C C+
Sbjct: 81 CFICAEGITYSCVLP-CNHRMCHVCALRLRALYKTKECTFCK 121
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 315 SEDIGSVAPSTNAAHKHNNTTLSSV---DTDVH 226
SED G+ AP N HKHN+ TLS D D H
Sbjct: 245 SEDFGA-AP--NCDHKHNSVTLSDFALPDIDQH 274
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 309 PHCRAALHLHELVNCRWVEEVTQQIETMQQTNTASHRENYRDR 437
P R HL L+N V +Q ET +T+S R DR
Sbjct: 160 PSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRNTLFDR 202
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 300 SVAPSTNAAHKHNNTTL-SSVDTDVHPPASPYR*SSGTLQLTSPQF 166
S A ST + + + SS T PP P + +SG Q T+P+F
Sbjct: 217 SYAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQPTSGESQNTNPRF 262
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 441 PNHQEKLTVYCWTCRRCICHQCALWGGTHSGHTFKPLEEVYEQH 572
PN + L VY R I HQC + + + L+ Y H
Sbjct: 330 PNDSKTLLVYVPPLRADILHQCDIMEDLGIAYGYDNLKHTYPAH 373
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 195 RCFICMEKLVDAHLCPHCSKLCCY 266
RC C+ + ++ +C C KL C+
Sbjct: 1828 RCSKCLTEPMEPAICLFCGKLLCF 1851
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 493 YVISALSGVAPIRGTPSNRWKRYMSNMLLRYVMKSLNCGEG 615
+VI+ LS TP NR+ + + + + Y + NC EG
Sbjct: 350 FVINVLSIALYKLFTPKNRYMKALESGCIDYFKRGGNCVEG 390
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 240 PHCSKLCCYACVRRWLTEQRSQCP 311
P C C +CV R T +QCP
Sbjct: 32 PECYHKMCESCVDRIFTTGPAQCP 55
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = +3
Query: 246 CSKLCCYACVRRWLTEQRSQCPHC 317
C + C+ W+T ++ CP C
Sbjct: 223 CEHVFHTQCIDTWMTTMKASCPLC 246
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 165 QIVETLAEVFRCFICMEKLVDAHLCPHCSKLCCY 266
+I E+ + F+ +E+L+D H C+KL Y
Sbjct: 91 EINESFCDHLLPFLILEELMDIHTVNECAKLYEY 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,413
Number of Sequences: 5004
Number of extensions: 58486
Number of successful extensions: 201
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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