Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o01
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   4.7  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   6.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   8.1  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   8.1  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = -3

Query: 460 KNYNHLYCYKYSILQIYCMYQSS*DKTFHLLECQLHPNKHSHGSTSIHH*LFVLFCGTCL 281
           KNY H++ Y+  ILQ +  Y      T  LLE      K  + +++ +H  +VLF  + +
Sbjct: 143 KNY-HVWSYRVWILQNFNDYSQELKLTNELLE------KDIYNNSAWNHRFYVLFETSKV 195

Query: 280 VSFPANAKVPFL 245
           VS+    ++ +L
Sbjct: 196 VSWSLEEELNYL 207


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 591 YIFTHFPLTLYHFQQPIFFLEPYLKR 514
           ++ THFPL   H   PI+  E Y  R
Sbjct: 56  FVLTHFPLIDGHNDLPIYLRENYDNR 81


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 324  PFTINFLSYFAAHAWFHSRQM 262
            PF   FLS+F AHA FH   M
Sbjct: 1161 PFD-RFLSFFYAHAGFHVNNM 1180


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 295 CGTCLVSFPANAKVPFLDCNQLSVL 221
           C  C+ S    A  PF DCN ++ L
Sbjct: 183 CYECIESDELRANCPFTDCNSINHL 207


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 148 ALSIKCWNCRSSTDPKCADPFDNST 222
           A S K W C +S  P+CAD  DNS+
Sbjct: 358 ANSYKNWLC-ASVIPRCADINDNSS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,446
Number of Sequences: 5004
Number of extensions: 52245
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)