Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n19
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    32   0.30 
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    31   0.93 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   2.8  
U80843-4|AAB37964.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      28   5.0  
Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z68120-3|CAA92201.1|  266|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006722-3|AAK68421.3|  404|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    25   7.2  
U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 176 QPDPTGLPGAKLP--DPYPVPDVKQSLTLGTMNFKNIALYGTNEFRLNYVKAD-IGAMEA 346
           QP P  LPG + P   P P+P +     L  + ++ I +  TNE RL  +  D +  M  
Sbjct: 27  QPPPQDLPGLQDPPLTPLPLPPLLCPHPLSLLTWEGIQIPTTNECRLLGLHFDSMLCMRE 86

Query: 347 HAVMTLEKLQARGN 388
           H     ++LQ++ N
Sbjct: 87  HHAQIKKRLQSQLN 100


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +2

Query: 77  QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPT 190
           +++PE+   + E++SE ++KL  ++  +++   +PD T
Sbjct: 20  KKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTT 57


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 113  KLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVK 241
            K S+GEKK+  N   + +    P P   P  + P+P P P V+
Sbjct: 2795 KNSKGEKKVKENTAPVQQ---APVPVSPPREETPEPTPSPPVR 2834


>U80843-4|AAB37964.1|  470|Caenorhabditis elegans Hypothetical
           protein C32B5.9 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 302 FRLNYVKADIGAMEAHAVMTLEKLQARGNYTFATWFNSVRGPFTVHITGLRVTANAGLQV 481
           F L+     + + E    + L+ L+  GN   +   NS+R    V+  G R++    L V
Sbjct: 173 FHLSQQYPSLLSTERSVPLRLDSLKLGGN---SDSVNSIRCELAVYRHGGRLSKKFKLDV 229

Query: 482 ERDGKIRAENIVMDLSASNIAVNLE-NAEI 568
             DGK+   NIV+      I V+L  N EI
Sbjct: 230 TEDGKVDM-NIVVVEGLGEILVDLRGNREI 258


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 83  IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 220
           +P  + S    +S  +  L+H  +A +     P P   P  KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 515 VMDLSASNIAVNLENAEIISGFINTIGPFIFDSIKPYV 628
           + DL+ +++  NL   + +SG + +I  FI    +PY+
Sbjct: 321 ITDLNGADMTKNLYLGQFLSGLVLSIAQFIIGMTEPYL 358


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 83  IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 220
           +P  + S    +S  +  L+H  +A +     P P   P  KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280


>Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 SEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPD-VKQSLTLGTMN 268
           S  +K L+  +         P   G P A  P P PV D  K+  T+ TM+
Sbjct: 16  SNRKKNLTKELSREASRMGAPSQMGAPSAVTPIPVPVSDPTKKGTTMSTMS 66


>Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 SEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPD-VKQSLTLGTMN 268
           S  +K L+  +         P   G P A  P P PV D  K+  T+ TM+
Sbjct: 16  SNRKKNLTKELSREASRMGAPSQMGAPSAVTPIPVPVSDPTKKGTTMSTMS 66


>Z68120-3|CAA92201.1|  266|Caenorhabditis elegans Hypothetical
           protein T24C2.3 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 233 LELGMDLVV*-LPAVPWDPAVYNAPE*PRYYD*VFFRLPKVFHLHS 99
           L+LG DLV     A+P     Y+ PE P   D V +++P+ FH ++
Sbjct: 153 LKLGDDLVKRNTAALPLSFDSYDVPELPASCDFVSYQMPQQFHYYT 198


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 35  LCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAIL 163
           L + L+ L + R+ +E+    ++    ++E EKK++H +LAI+
Sbjct: 242 LNISLIRLVKRRHSEELLVRNAAGPSSMAEQEKKMTHTVLAIV 284


>AC006722-3|AAK68421.3|  404|Caenorhabditis elegans Hypothetical
           protein Y19D10A.8 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 542 AVNLENAEIISGFINTIGPFIF 607
           ++ L N + ISGFI+ +G F+F
Sbjct: 100 SIGLRNTQTISGFISGLGSFLF 121


>AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical
           protein F56A4.10 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 542 AVNLENAEIISGFINTIGPFIF 607
           ++ L N + ISGFI+ +G F+F
Sbjct: 64  SIGLRNTQTISGFISGLGSFLF 85


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 25.4 bits (53), Expect(2) = 7.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 277 VFKIHSSKSE*LFDVWNWVWIW 212
           VF     +SE   D W WVW W
Sbjct: 327 VFTAFFYQSEGYEDKWMWVWSW 348



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 4/16 (25%), Positives = 10/16 (62%)
 Frame = -1

Query: 226 WVWIW*FSSRQSRGIR 179
           W+W+W ++   +  +R
Sbjct: 342 WMWVWSWADAAAHALR 357


>U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical
           protein K02E10.4a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 394 GVVAACLQFFESHHGVGLHCSDIGLNVI 311
           G+   C Q   S  G  +HC+D+GL  I
Sbjct: 163 GLPMKCSQIARSCPGENMHCADVGLGYI 190


>U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical
           protein K02E10.4b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 394 GVVAACLQFFESHHGVGLHCSDIGLNVI 311
           G+   C Q   S  G  +HC+D+GL  I
Sbjct: 164 GLPMKCSQIARSCPGENMHCADVGLGYI 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,068
Number of Sequences: 27780
Number of extensions: 285691
Number of successful extensions: 926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)