Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n15
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    31   0.047
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   2.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   4.1  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    24   7.1  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 31.1 bits (67), Expect = 0.047
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +1

Query: 1   CSQKPDAQNMWAKYQECNDRVNSR---SKTAETCEEELIDYVHVLDKCVTKDLFKRL 162
           C   PD + +   ++EC  RV  +      +E C EE     H    C    +FK L
Sbjct: 157 CMDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCADPKVFKVL 213


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 156 LKQVLGDAFVKNMDIVNEFFFTGFCSFRS 70
           +KQ L D+F  N +  N FF + + SF S
Sbjct: 468 IKQALNDSFDGNEEKKNAFFLSSYKSFAS 496


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 105 EFFFTGFCSFRSGVY 61
           +FF T FC FRSG +
Sbjct: 231 QFFHTAFCLFRSGSF 245


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 135 AFVKNMDIVNEFFFTGFCSFRSGVYTII 52
           A +KN D VN  ++       SGV TI+
Sbjct: 51  AVIKNFDEVNRMYYIQVVGNLSGVITIV 78


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 250 YLCTKCENHQCCYC 291
           Y C  C+NH C  C
Sbjct: 389 YACPSCKNHFCLDC 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,519
Number of Sequences: 5004
Number of extensions: 23214
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)