Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n15
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0400 + 3017898-3017980,3018785-3018869,3019686-3019775,301...    35   0.019
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454...    34   0.033
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    29   1.2  
04_03_0142 + 11773124-11774158                                         26   6.6  

>11_01_0400 +
           3017898-3017980,3018785-3018869,3019686-3019775,
           3019896-3019928
          Length = 96

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 10  KPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRLK 165
           KP       +Y++C  RV       + C  +  DY   +DKCV   L ++LK
Sbjct: 45  KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 96


>02_04_0138 -
           20144653-20144685,20144992-20145081,20145405-20145489,
           20146859-20146922,20149388-20149628
          Length = 170

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 31  WAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRLK 165
           W +YQ+C  R+       + C  +  DY   +DK V + LF  LK
Sbjct: 126 WYEYQKCVKRIEDDETGQKHCTGQYFDYWKCVDKNVAEKLFDSLK 170


>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
            30710769-30710882,30711019-30711111,30711888-30711977,
            30712157-30712227,30712300-30712374,30712481-30712568,
            30712748-30712806,30712893-30712956,30713030-30713095,
            30713283-30713435,30713522-30713626,30713739-30713974,
            30714104-30714173,30714286-30714339,30714501-30714557,
            30714662-30714741,30716056-30717919
          Length = 1226

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 7    QKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTK 144
            ++ D   +   YQEC  +VN + +    CEE L      LD   +K
Sbjct: 1122 EQKDMDCLLVDYQECVFKVNLKEEKIRACEESLQHQTRSLDDMNSK 1167


>04_03_0142 + 11773124-11774158
          Length = 344

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 100 LLHRFLQF*IWSLHDHCTLDI*PTC 26
           LLHR+++  ++ +H +C LD+   C
Sbjct: 144 LLHRYIRLAMYGIHIYCFLDLLLPC 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,912,868
Number of Sequences: 37544
Number of extensions: 129114
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)