Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n15
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   9.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   9.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 64  LHDHCTLDI*PTCFGHQ 14
           L  HC  DI PT   HQ
Sbjct: 243 LEAHCYFDIEPTVQQHQ 259


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 1   CSQKPDAQNMWAKYQECNDRVNS 69
           C  +P     WA Y++C+  V++
Sbjct: 106 CLLQPYPDWSWANYKDCSGIVSA 128


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  WAKYQECNDRVNSRSKTAETCE 96
           +AKY +C+  V++     + C+
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCD 133


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 292 NSNNIGDSHILYINKFTKTTGPLKLQMRL 206
           N N  G S++L    +   T  LKL+  L
Sbjct: 23  NDNEFGFSYLLNCKNYDHPTTLLKLKRYL 51


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  WAKYQECNDRVNSRSKTAETCE 96
           +AKY +C+  V++     + C+
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCD 133


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  WAKYQECNDRVNSRSKTAETCE 96
           +AKY +C+  V++     + C+
Sbjct: 112 FAKYDDCSGIVSASKLAIDKCD 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,000
Number of Sequences: 438
Number of extensions: 1554
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)