Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n14
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0413 + 17372852-17373787                                         35   0.060
09_04_0409 + 17359459-17360622                                         31   0.74 
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    31   0.74 
09_04_0410 + 17362751-17363698                                         30   1.7  
01_01_0488 - 3597652-3598761,3599619-3600860                           29   5.2  
12_01_0187 - 1387128-1387210,1387532-1387805                           28   9.2  
11_01_0187 - 1474695-1474774,1475183-1475456                           28   9.2  

>09_04_0413 + 17372852-17373787
          Length = 311

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 574 ESIKINNKDGLKIHMFLVKQPFNSKYIPTMIFFHGNA 684
           + + ++   GL + +FL  +P  SK +P ++FFHG A
Sbjct: 46  KDVVVDADTGLSVRVFLPARPDPSKKLPVLVFFHGGA 82


>09_04_0409 + 17359459-17360622
          Length = 387

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 574 ESIKINNKDGLKIHMFLVKQPFNSKYIPTMIFFHGNA 684
           + + ++   G+ + +FL K    SK +P ++FFHG A
Sbjct: 122 KDVVLDADTGVSVRLFLPKLQEPSKKLPVVVFFHGGA 158


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 410  ILENSVIVDTIKSRYSKTLTT*YISIF*IDLSNYITTYRYFRYI 279
            +LEN+++  T    Y  +  T Y++     + NY  T+R+F Y+
Sbjct: 2143 VLENTILTITQSPTYQGSAMTQYMNAILTRICNYCETHRHFNYL 2186


>09_04_0410 + 17362751-17363698
          Length = 315

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 574 ESIKINNKDGLKIHMFLVKQPFNSKYIPTMIFFHG 678
           + + I+   GL + ++L K    SK +P ++FFHG
Sbjct: 48  KDVVIDAGTGLSVRLYLPKIQEPSKKLPVLVFFHG 82


>01_01_0488 - 3597652-3598761,3599619-3600860
          Length = 783

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 222 SVHSCLILYICSRANFNQFNVPEIPIGCY---VVR*INLKNRNVSGSEGFTVPTFDCIHY 392
           S H C   +  SRA           +GC+   ++R + L +  +   E + +PT DC+  
Sbjct: 520 STHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCERYALPTRDCLFA 579

Query: 393 NTIF*YFTILVSWVLN 440
           + +    T+L  W +N
Sbjct: 580 DPLHDGKTMLKIWNVN 595


>12_01_0187 - 1387128-1387210,1387532-1387805
          Length = 118

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 680 LPWKNIIVGIYLLLNGC 630
           +PWK+I + ++LLL GC
Sbjct: 41  IPWKSIALALFLLLLGC 57


>11_01_0187 - 1474695-1474774,1475183-1475456
          Length = 117

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 680 LPWKNIIVGIYLLLNGC 630
           +PWK+I + ++LLL GC
Sbjct: 41  IPWKSIALALFLLLLGC 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,679
Number of Sequences: 37544
Number of extensions: 341195
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)