Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20n13
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 43 4e-05
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 29 0.73
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 2.2
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 2.2
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 27 2.2
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 27 2.9
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 27 2.9
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 27 2.9
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 25 6.8
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 9.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 9.0
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 464 VTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITC 604
+T+ +++Q++ E +A VL S + CTYS GY+K Q +YAC+TC
Sbjct: 8 LTVKQYVEQQRELEREAREVLPYSFD-TCTYSMGYLK-QPLYACLTC 52
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -2
Query: 428 LHLYSHRSWTCLRNNYLRDFKRQ*CNVESILILQKSRLITRQSYFLKICQSVI 270
LHL+S W C ++YL++ + ++ L+ ++ LIT++ L+ C+ VI
Sbjct: 1128 LHLFSFFYWKCQHDDYLQEN----TSSKNNLLQKEWILITKKKVILEQCEYVI 1176
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 135 LNSEIISLLQNSLTVL---QVENHFTIVQYWGQIYATDLDYYIAVGLTNDALTDL*KVRL 305
+++EI+ ++ L+ L + + H TI+QY G ++ +Y+ + +++ L
Sbjct: 448 IHAEILETIKRRLSTLAFTRTKIHDTIMQYPGLVHTLFEQFYLEHAINHNSTPHL---HR 504
Query: 306 ARNQPAFLQN*DRFYITLLSFKVS*VIISKTC 401
A++ + + IT +S +I KTC
Sbjct: 505 AKSATSLADEASTYSITPMSATALMDLIQKTC 536
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 336 NFAKKPVDYAPIVLFKDLSER 274
+F + PV YAP+ FK LSER
Sbjct: 166 DFVECPVCYAPLSSFKTLSER 186
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 395 LRNNYLRDFKRQ*CNVESILILQKSR 318
+R+N LR+F C +ES+ IL SR
Sbjct: 82 IRSNVLREFPESLCRLESLEILDISR 107
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 81 NIHKLWEYKEYVNVNGATLNSEIISLLQNSLTVLQVENHFTIVQY 215
N+ + Y Y+++ T + ++ L NS+ V HF IV Y
Sbjct: 83 NVQSYFRYYNYISLYFVTHSKVPLNRLPNSMIPYTVFAHFDIVPY 127
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 99 EYKEYVNVNGATLNSEIISLLQNSLTVLQVENHFTIVQY 215
E +YV V + +I+SLL+ +L V+ H I+ Y
Sbjct: 13 EKSKYVPVRLSDEERKILSLLEAALEVIDYTGHVDIISY 51
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 234 TDLDYYIAVGLTNDALTDL*KVRLARNQPAFLQN 335
TD+ YY ++N A+ + + RLA+++P +++
Sbjct: 222 TDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRS 255
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 292 KKYDWRVINRLFCKIKIDST 351
K +++R N FCK+K D+T
Sbjct: 93 KNWEYRTANSWFCKMKWDNT 112
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 146 NHFIITEFSNSTTGRKPFHHRTILGTDLRHGSRLLHRCWPNK*RSDRSLKST 301
NHF + PFH R + T + S +L PNK + SL S+
Sbjct: 129 NHFFSHKQKKIQRESIPFHKRDNIETSDAYSSSILENSPPNKVQRLSSLDSS 180
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 395 DMSTNGVNTNEDVDMADCDGEKVVTMLDVLQEQQD 499
DM+ +TN + + + EK + D+LQE QD
Sbjct: 34 DMNNEDSDTNTSITQSPTNSEK---LTDILQESQD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,002
Number of Sequences: 5004
Number of extensions: 52833
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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