Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20n11
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 29 0.42
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 0.97
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 2.3
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.3
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 5.2
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.9
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 25 9.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.1
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 9.1
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 25 9.1
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 456 QRTEATKVYITLRVREGAVLGVLPVVLFAECCPQT---CKLFIDLLQGDGLGH 605
+R++ Y L+++E +V G V LF P CKL LL+GD + H
Sbjct: 4 KRSDYASAY--LKIKEASVSGGCTVQLFVALDPDALCACKLLSTLLKGDFISH 54
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.3 bits (60), Expect = 0.97
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 331 LGYRPRLNLLRTGRLSIVKLKRIRQCCILMGPL-RRTTLTFLHSELKLP 474
L Y P + + I++ KR+R+ C L G L R + + ELKLP
Sbjct: 473 LRYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEELKLP 521
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +3
Query: 60 IIYNMTLLNAILKKVSSSESLNRKYPSXXXXXXXXKTIKQRKRKHTHKGKVDCNW----L 227
I+ N T + + VSS LNR +T ++ + K T K D +
Sbjct: 52 ILNNETTIGSTKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRTEVFKKDAEHEAVVV 111
Query: 228 KLPVRPKRHDARSHYFKEIRKDNLQLYKRI 317
K RP+R + Y + + ++ +KRI
Sbjct: 112 KRDFRPRRPEQTRPYTYDFLRHQIE-FKRI 140
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 PKRHDARSHYFKEIRKDNLQL-YKRIVKAKARVQTTAELIEDWKTKHREIEKDTT 404
P D RS Y ++ + KR+V+ + ++++L ED+K RE+++ T
Sbjct: 210 PNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNT 264
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 133 YFLFKDSLEL--TFFNIAFNKVILYIICLNYCTLNFLL 26
Y+ F LE TF + F + +I+CL YC+ F +
Sbjct: 412 YWKFTALLEASATFISYPFQS-LAFIVCLKYCSFYFFI 448
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 378 HREIEKDTTMLYPYGPLAEDHAYISTQRTEA 470
HR++E + + L PY P + + Y+ +A
Sbjct: 437 HRKLESELSHLPPYSPYRDSYFYLEDDDGDA 467
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 201 KGKVDCNWLKLPVRPKRHDARSHYFKEIRKDNLQLYKRIVKAKAR 335
KGK+ + V+ + HD HY+K + + Y +I K++
Sbjct: 855 KGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLKIKDKKSK 899
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 578 INKQFASLRTALREQNHREHSQHRSLSH 495
+ F + REQ+H+ + QHR L H
Sbjct: 591 LKDSFELITAFSREQDHKIYVQHRLLEH 618
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 78 LLNAILKKVSSSESLNRKYPS 140
L NA++ +SSS +L++ YPS
Sbjct: 184 LFNALISILSSSSTLHKLYPS 204
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 280 KYVKIICSFTNVSSKRKLGY 339
+YVK+ S TN S +RK+ Y
Sbjct: 244 RYVKLYGSTTNTSKRRKVDY 263
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 183 KRKHTHKGKVDCNWLKLPVRPKRHDARS 266
K K G+VDC W K P K D S
Sbjct: 191 KSKLILAGEVDCIWDKKPCSAKESDVHS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,678
Number of Sequences: 5004
Number of extensions: 43845
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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