Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n11
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    30   1.8  
12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186...    29   2.3  
06_03_0879 - 25610014-25610094,25610458-25610595,25612038-25612103     28   5.4  
09_04_0242 + 15969091-15969128,15970172-15970409,15971439-159716...    28   7.1  
06_02_0197 - 12912818-12913411,12913505-12913732                       28   7.1  
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320...    27   9.4  
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    27   9.4  

>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 177  QRKRKHTHKGKVDCNWLKLPVRPKRHDARSHYFKEIRKDNLQLYKRIVKAKARVQTTAEL 356
            Q+  +   +G    + L L  R + HD     F E ++ N QLY++I +A+  ++   E 
Sbjct: 1376 QKTIERLEEGATTTDALYLTER-QEHDQTKKAFSEAQEINQQLYRKIEEAEKNIEQLREN 1434

Query: 357  IE 362
            +E
Sbjct: 1435 VE 1436


>12_02_1040 +
           25616967-25617276,25618042-25618163,25618397-25618623,
           25618708-25618885,25619054-25619197,25619448-25619669
          Length = 400

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 261 RSHYFKEIRKDNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYP 416
           + H  K  RK+   LY+ +V+    +      +   K  HR+++ +  +L P
Sbjct: 192 KQHLIKHYRKNKKLLYEEVVRLALDLARGLSFLHSKKIVHRDVKSENMLLDP 243


>06_03_0879 - 25610014-25610094,25610458-25610595,25612038-25612103
          Length = 94

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 238 TGNFNQLQSTLPLCVCFRFLCFMVLMI 158
           TGN + L S +  C CF  +  ++L++
Sbjct: 62  TGNLSDLDSAVGTCACFAVMVIIILLV 88


>09_04_0242 +
           15969091-15969128,15970172-15970409,15971439-15971668,
           15972235-15972469,15973133-15973224,15973333-15973336
          Length = 278

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +3

Query: 291 DNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYPYGPLAEDH 440
           DNL + + +VK   R +  A L  D   KHRE+    T    Y P+A DH
Sbjct: 90  DNLVVAQALVKVCERKKEVAILSVDVSLKHREL----TDAGEYPPVAFDH 135


>06_02_0197 - 12912818-12913411,12913505-12913732
          Length = 273

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 392 KGYDNAVSLWAPCGGPRLHFYTAN*SYQGVHN 487
           KG D+   LW P   P    +  N +Y  VH+
Sbjct: 184 KGVDDHCGLWLPAASPLQRVFRNNAAYHDVHH 215


>03_01_0417 -
           3197956-3198438,3198550-3200001,3200116-3200277,
           3200351-3201133
          Length = 959

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 174 KQRKRKHTHKGKVDCNWLKLPVRPKRHDARSHYFK 278
           K   RKHT K K +C+      RP R  ++   FK
Sbjct: 179 KPYSRKHTQKKKFECSSFVPGCRPTRQHSQGFKFK 213


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 285 RKDNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYPYGPLA 431
           R+ NL      +  K R+Q          T  R   K TTM YP  P+A
Sbjct: 171 REYNLICPSEALSEKQRIQRRVLCYFPASTNSRRCRKFTTMAYPVSPIA 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,953
Number of Sequences: 37544
Number of extensions: 268738
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)