Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20n09
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.051
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 29 0.63
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 28 1.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 3.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 4.5
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.5
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 7.8
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 7.8
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.051
Identities = 27/97 (27%), Positives = 49/97 (50%)
Frame = +3
Query: 390 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 569
A+ T+ L +S AT + A ++ +L + + SS T++ +S ST+ SL
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
Query: 570 RATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSL 680
+TN S P+S +++ L +T+ S T++SL
Sbjct: 162 SSTNSTTSATPTSSATSS---SLSSTAASNSATSSSL 195
Score = 25.8 bits (54), Expect = 5.9
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = +3
Query: 393 NGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLR 572
+ T+ LA+S T A S+ + A + + +S + N +S + + S++
Sbjct: 189 SATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS-- 246
Query: 573 ATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSL 680
+ V S +S STT ATS+ T+SL
Sbjct: 247 -STVSSSTPLTSSNSTTAATSASATSSSAQYNTSSL 281
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 29.1 bits (62), Expect = 0.63
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Frame = +2
Query: 332 YYTLAMTDPDAPSRKEPTFREWHHWLVGN--IQGNEVNSGETLSQYVGSGPP---EKTGL 496
+Y++ D D P+ + F +WL+ N I+ ++ +T + PP
Sbjct: 234 HYSVITLDLDVPNYETNRFETHCNWLLTNIPIEASKRVPIDTSKAFFQYRPPIVHRGEDK 293
Query: 497 HRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYD-DY 673
HR + L+ +Q S + P +++ R F ++EF Y+L +P+ + + + +D D
Sbjct: 294 HRILTLVLRQKSS-SISIP----SNALVRERFDLSEFCSIYDL-EPVGAHLWRSGWDSDA 347
Query: 674 VPIL 685
V +L
Sbjct: 348 VALL 351
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -3
Query: 421 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 257
D + + A+C F + + + +S++ S +R+ ++ + ++ L W Q I +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497
Query: 256 NFDSAWVFH 230
FD+A +F+
Sbjct: 498 EFDNALIFY 506
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -3
Query: 487 LFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCGFFTGRRIRVGHGQSVVL 329
LF H +G +AG L + VA P+ PFA FF GR+IR +VVL
Sbjct: 527 LFAVQMFHNMGVGWAGSLLGFIAVALIPM-PFAF--FFFGRKIREKSKMAVVL 576
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 595 FEIGTFVARSVSESRLVECELRWLF 521
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +2
Query: 194 DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSR 373
D+I K L++ +P G + LTP VK E V+ G+ + D P+
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE-EVEMYENMGEMTVDVIKATDLPAA 1052
Query: 374 KEPTFREWHHWLVGNIQGNEVNSGET 451
+ ++V +QG EV +T
Sbjct: 1053 DSNGKSD--PFVVFELQGEEVYRTKT 1076
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 605 FAKKYNLGDPIAGNFYEAQYDDYVPI 682
F K+Y DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 486 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 611
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 437 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 592
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 380 PTFREWHHWLVGNIQGNE--VNSGETLSQ 460
P+F+E HW+V ++ E + SG LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 7.8
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 371 RKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKLT 541
+K+ F + +W + +G+ + S E L +G PPE T + Y+ + YK QP
Sbjct: 2 QKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGF 60
Query: 542 FDEPRLTNTSSDKRANFKIAEFAKKY 619
F E L + K + FAK +
Sbjct: 61 FTEDALKMVGT-KPEDVMQVSFAKDW 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,477
Number of Sequences: 5004
Number of extensions: 64510
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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