Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20n04
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.0  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    26   2.7  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    26   2.7  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 258 N*LKKCHPADLCKKITRS*RIGQQHSFHFH 169
           N LKK H AD  ++ + S ++ Q  ++H H
Sbjct: 33  NPLKKIHSADSSRRRSTSSQLNQPSNYHMH 62


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 389 IECSLIDRLQRSNRLQFGKPN 451
           + C+  DRLQ   R  FGKPN
Sbjct: 103 LSCAGADRLQTGMRHAFGKPN 123


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 389 IECSLIDRLQRSNRLQFGKPN 451
           + C+  DRLQ   R  FGKPN
Sbjct: 103 LSCAGADRLQTGMRHAFGKPN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,893
Number of Sequences: 5004
Number of extensions: 31332
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)