Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m21
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL391121-3|CAI40861.1|  550|Homo sapiens tripartite motif-contai...    30   5.4  
U53583-2|AAC99555.1|  287|Homo sapiens olfactory receptor 17-210...    30   7.2  
BC021925-1|AAH21925.1|  551|Homo sapiens tripartite motif-contai...    29   9.5  
AF281046-1|AAG53087.1|  551|Homo sapiens glioblastoma-expressed ...    29   9.5  
AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protei...    29   9.5  

>AL391121-3|CAI40861.1|  550|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 327 CETKERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWKNSLE 473
           C+ + R  E  +L+ +QD+       I  Q YK E  ++L+E+  N L+
Sbjct: 180 CDVEIRRNEIRMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLK 228


>U53583-2|AAC99555.1|  287|Homo sapiens olfactory receptor 17-210
           protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 587 ISNKVISEVCPSSFVVAPYLRSSLSVIV*PTLAPTSSKFQTILPLFY*LLKIFMFICLRY 408
           +SN   S++C SS  +   L++  S    P++       Q    LFY +L+ F+ + + Y
Sbjct: 7   LSNLSFSDLCFSSVTMPKLLQNMQSQN--PSIPFADCLAQMYFHLFYGVLESFLLVVMAY 64

Query: 407 YCRYFCC 387
           +C    C
Sbjct: 65  HCYVAIC 71


>BC021925-1|AAH21925.1|  551|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 321 CDCETKERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWKNSLE 473
           CD E + RN    +L+ +QD+       I  Q YK E  ++L+E+  N L+
Sbjct: 180 CDVEIR-RNEIRKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLK 229


>AF281046-1|AAG53087.1|  551|Homo sapiens glioblastoma-expressed
           RING finger protein GERP protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 321 CDCETKERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWKNSLE 473
           CD E + RN    +L+ +QD+       I  Q YK E  ++L+E+  N L+
Sbjct: 180 CDVEIR-RNEIRKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLK 229


>AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protein
           TRIM8 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 321 CDCETKERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWKNSLE 473
           CD E + RN    +L+ +QD+       I  Q YK E  ++L+E+  N L+
Sbjct: 180 CDVEIR-RNEIRKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLK 229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,459,102
Number of Sequences: 237096
Number of extensions: 1485627
Number of successful extensions: 6593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6593
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)