Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m21
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 115 TFLKSLKVWVREFAI-RSSAL 174
           T  K +K+W+  FAI R SA+
Sbjct: 389 TIPKEMKIWIPAFAIHRDSAI 409


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 469  WNFEEVGASVGYTMTLSE 522
            WN E +G  VGY ++ SE
Sbjct: 1005 WNGEILGYYVGYRLSSSE 1022


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 179 WASADDRIANSLTHTFKLFKKVPSGSTAHNHYANDG 72
           WA   D    S   +FK F K P   T   ++   G
Sbjct: 39  WADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGG 74


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 344 SLFGLTITSFL*YFFLKLYRSISLCSTT--TLYLIL 243
           S FGL  T+ L  + + L R  S+ STT  TL ++L
Sbjct: 222 SKFGLGFTTDLLSYNILLRRHYSMNSTTYVTLTIVL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,220
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)