Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m20
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   1.7  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    26   1.7  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    26   1.7  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   2.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   2.9  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   3.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.1  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   5.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   6.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    24   6.8  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    24   6.8  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.0  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    24   9.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   9.0  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    24   9.0  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 134 VAIPRKIKFFNIVTIYQYIFEFSFRNPLKWLKKNVFLFHMSSVVLFRFSSINIVTFLL 307
           V I R++K  N+V ++ ++    F + +  L +   LFH   +V F + S N+   ++
Sbjct: 113 VNIMRRVKHKNVVNLFDFVETEDFYHLVMELAEGGELFH--QIVNFTYFSENLARHII 168


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 106 KVIFFYNKVAKHYFLEEKNSRRI*TIVNY 20
           KV  F NK ++  FL+ KN RR+   V Y
Sbjct: 27  KVFRFVNKKSESLFLQRKNPRRLSWTVLY 55


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 106 KVIFFYNKVAKHYFLEEKNSRRI*TIVNY 20
           KV  F NK ++  FL+ KN RR+   V Y
Sbjct: 27  KVFRFVNKKSESLFLQRKNPRRLSWTVLY 55


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 206 RNPLKWLKKNVFLFHMSSVVLFRFSSINIVTFLLCH 313
           R+P K  KK   + H SSV+ +  S ++ V+ +L H
Sbjct: 135 RDPSKLSKKETLVAHHSSVLWYLQSELSDVSSVLYH 170


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 FFVAIPRKIKFFNIVTIYQYIF-EFSFRNPLKW 223
           F+V   +KIKF  ++T Y+Y+  + S  + +KW
Sbjct: 470 FYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKW 502


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 157 FYFSRNSYKKHFIWKVPKVIFFYNKVAKHYFLEEKNSR 44
           FY S  S +K  IW  PK+  F   ++   +L     R
Sbjct: 114 FYSSSESSEKELIWFQPKMRVFLQSLSNMSYLSPSKFR 151


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -1

Query: 354 VVYLLNCTFSQIT**HRRNVTILIEENLNKTTLDM*NRKTFFFNHFRGFLKLNSNIYW*I 175
           V+Y L C+F  +T      V IL   +  KT LD  N     F+    FL +  N++  +
Sbjct: 529 VIYKLYCSFLNLTDPCNDAVVILTTIDAFKTVLDDWN-----FSE-NSFLSIKENLFVHV 582

Query: 174 VTMLKNF 154
           +++ K F
Sbjct: 583 LSLFKAF 589


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 239 FLFHMSSVVLFRFSSINIVTFLLCHYV-ICENVQF 340
           FLF +S + +  FSS  I+ FL   ++ +C  + F
Sbjct: 135 FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 193 KYILVNCDNVEKFYFSRNSYKKHFIWKVPKVIFFYNKVAKHYFLEEK 53
           KY+L + +  +  Y S    K H + +V   +  YN+    YFL+EK
Sbjct: 20  KYLLESAE--KHAYDSNEESKTHLLQEVFLSLLNYNEDNWKYFLKEK 64


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 176 IYQYIFEFSFRNPLKWLKKNVFLFHMSSVVLF 271
           IY++ F FS  N   W +  VFL++ + +  F
Sbjct: 94  IYKHGFFFSICNEKAWTQPLVFLYYCAYISKF 125


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 173 TIYQYIFEFSFRNPLKWLKKNVFLFHMSSVVLFRFSSINIVTFLLCHYVI 322
           +I+  +FE +       LKKN+ LFH+   +L   S+ +    +L  +++
Sbjct: 605 SIFLKVFETNLPTFFDQLKKNLTLFHIPQFLLSNESTSSKFLNILLRFLL 654


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 83  SGKTLFSRRKKFKTNLNHS 27
           +GKT  ++R +F TN+N+S
Sbjct: 546 TGKTEVAKRAQFPTNVNYS 564


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 139 SYKKHFIWKVPKVIFFYNKVAKHYFLEEKNS 47
           S+K+  + ++ +++F    VA H FL++ +S
Sbjct: 473 SFKRRVLRRIKQLLFSVTPVALHPFLQKTSS 503


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 165 LKNFIFLGIATKNILFGKFQK*FSSITKWQNII 67
           L   +FL    KN L G  QK F  I  W+ ++
Sbjct: 38  LSKTLFLDRKGKNKLNGTIQKEFGRIRGWKELV 70


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 163 EKFYFSRNSYKKHFIWKVPKVIFFYNKVAKHY 68
           E+ +FS N   K F W   K +  Y  +++ Y
Sbjct: 167 EQGFFSVNGPLKSFYWVFGKALALYGHLSQKY 198


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 179 YQYIFEFSFRNPLKWLKKNVFL 244
           YQ++F+ S  +  K+LK  VF+
Sbjct: 55  YQFVFDKSLMDHPKFLKNQVFM 76


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 131 KTFYLESSKSDFLL*QSGKTLFSRRKKFKTNLN 33
           +TF L    SD +L    K   S+RKK + NL+
Sbjct: 866 QTFILSRISSDTILLVPKKLYPSKRKKLRKNLD 898


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 369 FYITIVVYLLNCTFSQIT**HRRNVTILIEE 277
           FY +I+ YLLN  F  +T    R +T+LI E
Sbjct: 271 FYYSII-YLLNSMFYLLTFYSLRAITMLIYE 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,841
Number of Sequences: 5004
Number of extensions: 33000
Number of successful extensions: 80
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)