Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m20
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    28   2.1  
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265...    27   3.6  
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    26   8.4  
10_08_0794 - 20624517-20624666,20624977-20625082,20625305-206254...    26   8.4  

>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 215 LKWLKKNVFLFHMSSVVLFRFSSINIVTFLLCHYV 319
           L+ L+ +V    +S  ++FR S  NI+T LLCH V
Sbjct: 603 LEALQNDVVQCLVSFELIFRPSFFNIMTHLLCHLV 637


>01_06_1186 +
           35223272-35224723,35225536-35225610,35226245-35226585,
           35226621-35227005,35227131-35227559
          Length = 893

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 184 LVNCDNV-EKFYFSRNSYKKHFIWKVPKVIFFYNKVAKHYFLEEKNSRR-I*TIVNYVDR 11
           LV   NV + F    +  K +F+ +  K    +NK+AK   L E ++RR    ++N VD 
Sbjct: 65  LVKHPNVLQLFEVMASKSKIYFVLEYAKGGELFNKIAKEGKLSEDSARRYFHQLINAVDY 124

Query: 10  C 8
           C
Sbjct: 125 C 125


>12_02_0932 + 24519204-24519380,24520074-24520128,24520251-24522202,
            24522288-24522446,24522878-24523049,24523131-24523429,
            24524037-24524285
          Length = 1020

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 168  MLKNFIFLGIATKNILF 118
            +LKN++FLG+ T  ++F
Sbjct: 957  ILKNYVFLGVLTSTVVF 973


>10_08_0794 -
           20624517-20624666,20624977-20625082,20625305-20625400,
           20625577-20625623,20625751-20626029,20626160-20626248,
           20626348-20626440,20626593-20626688,20627167-20627274,
           20627410-20627728
          Length = 460

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 166 VEKFYFSRNSYKKHFIWKVPKVIFFYNKVA 77
           +++FY +  SY  H++ ++  VI   NK+A
Sbjct: 194 MKEFYIAGESYAGHYVPQLANVIVDQNKIA 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,989
Number of Sequences: 37544
Number of extensions: 150930
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)