Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m18
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 371 WIHNHN-GQTTELLSCSVDKTAVIWTLQNGCWNVTSI 478
           W  N N    T +   ++D+   +W L NG    TS+
Sbjct: 113 WAKNQNCSGITSVYRIAIDEWDRLWVLDNGISGETSV 149


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 403 LCCLAIMIVYPFYRVYVSCMVTQYCYSIFSFFIRITNN 290
           LC L+ M+  P Y +Y+    +      F   IRI +N
Sbjct: 587 LCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDN 624


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 406 QLCCLAIMIVYPFYRVYVSCMVTQY 332
           Q+ CL ++I      +Y++ ++ QY
Sbjct: 400 QMICLIVVIALVSIIMYIAFIILQY 424


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 403 LCCLAIMIVYPFYRVYVSCMVTQYCYSIFSFFIRITNN 290
           LC L+ M+  P Y +Y+    +      F   IRI ++
Sbjct: 534 LCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDD 571


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 308 EKTKDRVTVLSHH 346
           +K +DR+T + HH
Sbjct: 331 QKERDRLTAMMHH 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,447
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)