Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m17
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   1.8  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    23   7.3  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    23   7.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    23   7.3  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    23   9.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    23   9.6  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 68  VNYYSFFFVFLYVCLFRS 15
           ++Y+S F  FL+VC F S
Sbjct: 520 LDYFSIFITFLHVCSFGS 537


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 291 FYITCFISPC*FMSSVNTFNLANIISIFQCIE*RESVIPNNSFS 160
           F++   +SP   ++    + LA ++S+F+C      ++P N++S
Sbjct: 107 FWLWHHVSPAVPITFAYLYALA-VVSMFKCSTADPGILPRNAYS 149


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 114 VQVVIRPFNDKQEFNLKTSYLVSQIHVIQCTEI 212
           VQ+    +ND+ E+NL +     +  V+ C ++
Sbjct: 202 VQLAQLSYNDQVEWNLTSPLTPEEFSVLTCNDL 234


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 285  ITCFISPC*FMSSVNTFNLANIISIFQCIE*RESVIPNNSFSN*ILVC 142
            I C +S   F+S V   N + I +       RE +  +NSF N +LVC
Sbjct: 1185 ILCCMSD--FVSRVEGENTSKIFTEISKFV-REIISSSNSFKNYLLVC 1229


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 297 FFFYITCFISPC*FMSSVNTFNLANIISIFQC 202
           ++F +T  +    F S+++   LA  I +F C
Sbjct: 216 YYFCLTATVQYAIFFSTISRVGLALTILVFPC 247


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -3

Query: 271 LTMLIYVVGKYL 236
           +T+L+Y+VG+YL
Sbjct: 272 VTLLVYIVGEYL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,601
Number of Sequences: 5004
Number of extensions: 17889
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)