Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m17
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    27   3.2  
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    26   4.2  
Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 68  VNYYSFFFVFLYVCLFRSQKM 6
           V++ +  FV+ Y+CLF++QK+
Sbjct: 102 VSFIAVQFVYRYLCLFKAQKI 122


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 77  IRTVNYYSFFFVFLYVCLFRSQK 9
           + T ++ S  F++ Y+CLF S K
Sbjct: 99  LTTFSFISVLFIYRYLCLFDSSK 121


>Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 71  TVNYYSFFFVFLYVC-LFRSQKM 6
           T+N+ SF   FL VC LFRS+ +
Sbjct: 189 TINWDSFIGTFLCVCILFRSESL 211


>Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 71  TVNYYSFFFVFLYVC-LFRSQKM 6
           T+N+ SF   FL VC LFRS+ +
Sbjct: 189 TINWDSFIGTFLCVCILFRSESL 211


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical
           protein T28F3.5 protein.
          Length = 1679

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 126 IRPFNDKQEFNLKTSYLVSQIHVIQCTEI 212
           IR   +K E  LKT  +V  I + +CTE+
Sbjct: 542 IRRAFEKYEHQLKTGKIVLPIELSRCTEL 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,324
Number of Sequences: 27780
Number of extensions: 95926
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)