Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m16
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220...    28   7.1  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    27   9.4  

>08_01_0272 +
           2200061-2200078,2200835-2202076,2202201-2202698,
           2203316-2203345
          Length = 595

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 422 SDYVVTPSLDTSSNQIAVQNPETKPEWVHKL 514
           SD++ T   D   + + + +PE+KP+W  KL
Sbjct: 335 SDFLCTRCHDVIFSIVKLVHPESKPQWSQKL 365


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 332 NIYKIIASFRFPQVFCEMGMFACTSLFQ 249
           NI ++I SF  PQ FC +  FA   LF+
Sbjct: 64  NIIEMIDSFETPQEFCVVTEFAQGELFE 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,193
Number of Sequences: 37544
Number of extensions: 285777
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)