Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m15
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AC024771-3|AAK70660.1|  148|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    27   8.7  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 479 SIEDA-RFGYHWPPFRSVKHLHLHTIAPESEMGFIGR 586
           ++ED  R G+H PP  SV HLH+H I P S+MG I R
Sbjct: 90  TVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISR 126


>AC024771-3|AAK70660.1|  148|Caenorhabditis elegans Hypothetical
           protein Y40B10A.5 protein.
          Length = 148

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -1

Query: 147 FYYCLTTFRIFYIIITCLTYISIGVYPHIFIYL-------KLWPCLLHRHDEYYIL 1
           F + +    +F+ +I  +TY S GVY  I + +        +W C +  H++++IL
Sbjct: 27  FQFVIIGACLFFDVIFGITYFSAGVYRAILVIIYDRFPLVSMWDCFMTVHNQFFIL 82


>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 168 YRKRN*AFYYCLTTFRIFYIIITCLTYISIGVYPHI 61
           Y+ R  +    LTTF+I +   TC+ Y+ I    H+
Sbjct: 290 YQTRARSIINALTTFQILFFSATCIYYLFISKSSHV 325


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 147 FYYCLTTFRIFYIIITCLTYISIGV 73
           F YCL    IF+II   L  ++IGV
Sbjct: 173 FTYCLINVGIFHIIFNILIQLAIGV 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,201
Number of Sequences: 27780
Number of extensions: 281533
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)