Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m09
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    60   3e-10
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.37 
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   1.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   6.0  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   6.0  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +1

Query: 298 APAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILSGYVE 477
           APAVV   +DD  V    N++EL  N    E+  PA GP NPF T++  + +N ++GY E
Sbjct: 31  APAVVDNVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVTKEQDSIKNSITGYAE 90

Query: 478 LAHISDFQF--ENQRRTFTSYG 537
             ++ +F F  E    T   YG
Sbjct: 91  REYVPNFVFNQEYYANTHAIYG 112


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 645 FQKLIAFCIFFRVYH--SRFHYSISFLLLNICRRIYSITITRKCSSLILKLKIAN 487
           FQ  +  C+    Y+  + F   +S  L N+C +  ++   R+C SL +K+ +++
Sbjct: 518 FQSSLEGCLNLAAYYEDAEFPQKLSNHLYNLCVKSSNVNYARECISLSIKIAVSH 572


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 591 EICYDRP*RRY--RRQSVFETIKKRPLDKKKRTQNDNP 698
           E+ +D P   Y  R+    E +KKR  D KK+T  DNP
Sbjct: 844 ELVWDAPTSSYSVRQMLSQELLKKRLADIKKQTLTDNP 881


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +1

Query: 454 NILSGYVELAHISD-FQFEN 510
           NI+ GY++L H+SD  Q++N
Sbjct: 413 NIIQGYLDLVHLSDQDQYDN 432


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 448 TRNILSGYVELAHISDFQFEN 510
           +++ L  Y+ LAHI +F FEN
Sbjct: 280 SKDYLLAYLPLAHILEFAFEN 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,329
Number of Sequences: 5004
Number of extensions: 57281
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)