Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m09
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0256 + 15898702-15900420                                         51   8e-07
07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848...    30   2.0  
07_03_0394 - 17633753-17636788                                         29   2.7  

>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 373 NPKYEELFAPAFGPENPFQT-QQMKATRNILSGYVELAHISDFQFENQRRTFTSYGYAVD 549
           NP  ++L+AP  GP++P          RN   G+VE A +  F F+ Q  TF  +GYA D
Sbjct: 68  NPTADQLWAPVLGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFHRFGYAAD 127

Query: 550 PS 555
           PS
Sbjct: 128 PS 129


>07_03_1275 +
           25382959-25383765,25383850-25384050,25384693-25384888,
           25385583-25385767
          Length = 462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +1

Query: 340 LIPAN---AKELTHNPKYEELFAPAFGP-ENPFQTQQMKATRNILSGYVELAHISDFQFE 507
           L+PAN   A++  + P  E  F   +   E+PF   +  +  N+ +    LA I     +
Sbjct: 28  LVPANIYPAQDYLYEPSLEPDFPSEYDSREDPFVPTRASSNINLKTVLTGLAAIVSGTNK 87

Query: 508 NQRRTFTSYGYAVDPSTNIEEQEGDAIVKSAMIDP 612
           NQ  T     ++ D S    +++GD  V  ++  P
Sbjct: 88  NQDNTLQQQSFSTDVSFLGFDKDGDVNVHPSVCVP 122


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -2

Query: 681  FSSFCLGVAFLLFQ---KLIAFCI-FFRVYHSRFHYSISFLLLNICRRI 547
            F  FCL  A +L+    ++IA C+ FF + H RF + +    +N  RR+
Sbjct: 955  FLLFCLLTAVILYVTPFQVIALCLGFFWMRHPRFRHKVPSAPVNFFRRL 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,665
Number of Sequences: 37544
Number of extensions: 318997
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)