Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m09
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    76   3e-14
AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical ...    41   0.001
AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    30   1.4  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    30   1.4  
Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF078785-5|AAC27088.1|  192|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 32/89 (35%), Positives = 55/89 (61%)
 Frame = +1

Query: 289 VCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILSG 468
           +  AP V   +      ++    KE+  NPK+++LF P  GP N F+++Q ++ +N L+G
Sbjct: 37  IVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQRSQKNTLTG 96

Query: 469 YVELAHISDFQFENQRRTFTSYGYAVDPS 555
           +VE AH+++F F  Q R+F + GYA +P+
Sbjct: 97  FVEPAHLNEFHFNRQIRSFDTLGYAQNPT 125


>AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical
           protein Y54G2A.12 protein.
          Length = 274

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 289 VCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATR 453
           +  AP V   +      ++    KE+  NPK+++LF P  GP N F+++Q   TR
Sbjct: 35  IVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQFGTTR 89


>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = -2

Query: 633 IAFCIFFRVYHSRFHYSISFLLLNICRRIYSIT-ITRKCSSLI-LKLKIANMCQFYIAR* 460
           I  C  F V+      S S LL++I     +++ I  + S+L  L + +   C  YI   
Sbjct: 51  IMMCSIFLVFVFPTQVSSSVLLISISNHFGTLSMIVYEISNLSHLTIAMNRFCAMYIQHR 110

Query: 459 YVSRCLHLLCLKWILWSESGCKQLL-ILWIVC*LFCVCWY*NSSVIFIRRHHSWS 298
           Y             ++S++    L   LW+    FC CWY  S   F     +W+
Sbjct: 111 YER-----------IFSKTNTMVLRNYLWVFSIAFCTCWYEISKCFFFYDTQTWT 154


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = -2

Query: 633 IAFCIFFRVYHSRFHYSISFLLLNICRRIYSIT-ITRKCSSLI-LKLKIANMCQFYIAR* 460
           I  C  F V+      S S LL++I     +++ I  + S+L  L + +   C  YI   
Sbjct: 51  IMMCSIFLVFVFPTQVSSSVLLISISNHFGTLSMIVYEISNLSHLTIAMNRFCAMYIQHR 110

Query: 459 YVSRCLHLLCLKWILWSESGCKQLL-ILWIVC*LFCVCWY*NSSVIFIRRHHSWS 298
           Y             ++S++    L   LW+    FC CWY  S   F     +W+
Sbjct: 111 YER-----------IFSKTNTMVLRNYLWVFSIAFCTCWYEISKCFFFYDTQTWT 154


>Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical
           protein F11A10.6 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = -2

Query: 312 HHSWSSTYLHGLGHGQTRINRLKMGQESFIAELVCFCIITFIL*TTAVFFYIEHFC**LK 133
           H   +   L+       ++  +  G  +F+  +V F  +T+IL  +  FFYIE     L 
Sbjct: 87  HFGTNLVRLNNTNESLLKLYAITQGVTTFV--IVVFAYLTYILFDSIKFFYIEP----LV 140

Query: 132 FYIEVC--TVMMMSQFINNFNVLKQK*TRLNYFISTFVVV 19
               +C   +++M QF+ +  VL     R+ Y    F+ +
Sbjct: 141 GMTPICASVMVLMKQFLPDTIVLATPLGRIKYAHLPFLAI 180


>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 690 HFGFSSFCLGVAFLLFQKLIAFCIFFRVYHSRFHYSISFLLLNICR-RIYSITITRKCSS 514
           HF      + V     + L+A C  FR+ +S  H  +S ++ + CR  + SI    K + 
Sbjct: 302 HFDLEYQVVSVTQEYKEILVALCFTFRIVNSISHILVSIMMSSHCRDTVKSIVFWGKIAK 361

Query: 513 L 511
           L
Sbjct: 362 L 362


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 404 AGANSSSYFGLCVNSFAFAGIKTLVS 327
           AGA+SSS+F L +  FAF  +  +VS
Sbjct: 766 AGASSSSFFWLFITFFAFVVVGIVVS 791


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 448 TRNILSGYVELAHISDFQFENQRRTFTSYGYAVDPSTNIEEQEGDAIVKSAMIDPK 615
           TRNI+ G++ L  I     +NQ+ +    GY +   TN  +    +I   A + P+
Sbjct: 108 TRNIVHGFLHLNSIYITDRKNQKLSVKLSGYGLPFLTNYGKDTASSIKFGAFLAPE 163


>AF078785-5|AAC27088.1|  192|Caenorhabditis elegans Hypothetical
           protein C04E12.2 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 377 GLCVNSFAFAGIKTLVSSSFVGTTAGAAHTCMVLATDKLGSTGLRWVKRA 228
           G  + +FA+   K    S   G T G   TC+  A D +  T    +K+A
Sbjct: 11  GTLLLTFAYGAYKPPNKSDCKGVTVGKVFTCLYRAGDYMAKTFFLDIKKA 60


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 672 FCLGVAFLLFQKLIAFCIFFRVYHSRFHYSISFLLLNICRRIYSITI 532
           FCL + F +    + FC F + ++ R   ++  ++L +    +SITI
Sbjct: 125 FCLTIIFQMSLNQL-FCFFSKTWNHRIFGNVQIVILILFSASFSITI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,229
Number of Sequences: 27780
Number of extensions: 321849
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)