Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m09
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.17 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.5  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -2

Query: 678 SSFCLGVAFLLFQKLIAFCIFFRVYHSRFHYSISFL--LLNICRRIYSITITRKCSSLIL 505
           SS  L   FL+F +   F   F++ H+     I  L  LL++ R +    + R  S    
Sbjct: 175 SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWE- 233

Query: 504 KLKIANMCQFYIAR*YVSRCLHLLCLKWILWSESGCKQLLI 382
           ++   NM   ++      R  +L+C+  ++   SGC Q L+
Sbjct: 234 EVYFLNMASVFM------RIFNLICMMLLIGHWSGCLQFLV 268


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 450 RCLHLLCLKWILWSESGCKQLLI 382
           R  +L+C+  ++   SGC Q L+
Sbjct: 278 RIFNLICMMLLIGHWSGCLQFLV 300


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 600 SRFHYSISFLLLNI 559
           SRF +  SFL+LN+
Sbjct: 363 SRFFFPFSFLILNV 376


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 118 YFNIKF*LLTKMLNIKKY 171
           Y NIK   LTK L IK Y
Sbjct: 90  YKNIKLYGLTKNLEIKNY 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,973
Number of Sequences: 438
Number of extensions: 3980
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)