Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m07
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   0.70 
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   0.93 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   3.7  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   6.5  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 123 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*XKVYKNYK*NELYLHLLHC 293
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 51  AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 158
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 103 TAEAPLCCENSQVKVCS 153
           T+E P CC N +  VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 102 HVCVTPWFVARFVKS*KLKFVDIFKPAAENFRA 4
           H+ V+PW V R  +  K  +  + K +A N RA
Sbjct: 341 HLHVSPWVVYRRYRGFKTLYYLLKKQSARNGRA 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,783
Number of Sequences: 5004
Number of extensions: 19311
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)