Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m06
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    36   0.033
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    32   0.53 
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854...    31   0.93 
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    28   8.7  
07_01_0084 + 657846-658538,660652-661920                               28   8.7  
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    28   8.7  

>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
 Frame = +2

Query: 251 EDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQDPIKF-TYKVHRPKNDTQFCRFITETI 427
           E +I +PIE    T S + +   ++ +      +PI+  + K+     DTQ  + I++ I
Sbjct: 352 EKIISEPIE----TQSEKIISEPIDAQSEKIISEPIEAQSEKIISEPIDTQTEKIISDPI 407

Query: 428 NSLKNDEIMKPVEAEVQKMLYGDLPNGGRSQYLIARKMKTPNEKYYSDQTTNQ 586
            +     I +P++A+ +K++    P   +S+ +I+  + T  EK  SD    Q
Sbjct: 408 EAQSEKIISEPIDAQTEKII--SEPIEAQSEKIISEPIDTQTEKIISDPIDTQ 458



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 392 DTQFCRFITETINSLKNDEIMKPVEAEVQKMLYGDLPNGGRSQYLIARKMKTPNEKYYSD 571
           DTQ  + I+E I +     I +P++A+ +K++    P   +S+ +I+  + T  EK  SD
Sbjct: 348 DTQSEKIISEPIETQSEKIISEPIDAQSEKII--SEPIEAQSEKIISEPIDTQTEKIISD 405


>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 47  RFYFTLNI*YHI*K*IVMPLDYSNPYIIKFLSENFEKETKSRVAW 181
           R+ F LN  Y +    ++P DYS P  IKF  E ++KE   R +W
Sbjct: 223 RYLFLLNNSYVVQYQFLVPSDYSPPSEIKFHYEQYQKE-YMRASW 266


>02_02_0284 -
           8547126-8547187,8547306-8547395,8547810-8547861,
           8548209-8548284,8550513-8550632,8553334-8553423,
           8553842-8554024,8554125-8554185,8554437-8554477,
           8554563-8554727,8555699-8555776,8556137-8556282
          Length = 387

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 602 FSDHEGQGQSEYGRKYSLSRANS 670
           +SDHEG+  S YGR  S SR+ S
Sbjct: 132 YSDHEGRRSSHYGRSRSRSRSRS 154


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 566 SDQTTNQLIGWNFSDHEGQGQSEYGRKYSLSRANSRSGPQPDPCYYQQPAKNP 724
           SD+TT      N+     + +S+Y    S S A S+   QP  CY QQ ++ P
Sbjct: 256 SDETT-WFPNQNYQHVYKEEESQYQEILSSSCAESKISAQPIYCYNQQFSEQP 307


>07_01_0084 + 657846-658538,660652-661920
          Length = 653

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +2

Query: 488 YGDLPNGGRSQYLIARKMKTPNEKYYSDQTTNQLIGWNFSDHEGQGQS---EYGRKYSLS 658
           YG     G     +A +++T  +K+  D   N  +GW        G     E GR+Y   
Sbjct: 172 YGPAKEEGEGWKEVAAEVRTYEQKHMCDSPANSSVGWRDPGFVFDGLMKGLEPGRRYFYK 231

Query: 659 RANSRSG 679
             ++ SG
Sbjct: 232 VGSNSSG 238


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 372 LYVNFIGSC*GATFRRLTLFSKCCLERVLSNISIGFRITSS---KWYPL*FAENLSLLEI 202
           + V  +G C  A   R T+  + C E      S GF  + +   +W PL  +  +S+L++
Sbjct: 339 MIVELVGCCDRALASRSTIHRQFCFEPQHLRSSFGFSSSETLQYQWMPLIKSPVMSILDV 398

Query: 201 S 199
           S
Sbjct: 399 S 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,749
Number of Sequences: 37544
Number of extensions: 319777
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)