Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20m01
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 29 0.70
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.6
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 2.1
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.7
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 3.7
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 26 6.5
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 6.5
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 8.6
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -3
Query: 676 LLAVLVDTSICILVVVHFSLSESFSFPPIPLSIL*FAFSKPPPLFRYISDILYVQEFLY 500
L+ L + S IL ++ + E+ + P S + AF+K +FR + DI + F+Y
Sbjct: 101 LIPTLGNLSNIILSILGKPVQEASAIVTNPASEMGMAFTKVMNMFRMVKDIYTEESFIY 159
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 234 SGYFHLDFFYFAFHIPQLFLQ*NGSS 157
S +F+L++ FA+++PQ F + G +
Sbjct: 365 SSFFYLNYMLFAYYVPQYFQRIRGDN 390
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 172 LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGE 333
+Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-N 198
Query: 334 SVNKASEERSCNLTQITKLREEL 402
S+++ + L + + E +
Sbjct: 199 SIDRRFDSMEQRLDSMDQKMETI 221
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 172 LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGE 333
+Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-N 198
Query: 334 SVNKASEERSCNLTQITKLREEL 402
S+++ + L + + E +
Sbjct: 199 SIDRRFDSMEQRLDSMDQKMETI 221
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 648 SVFLLLFIFLSQSHFRFLQFLFQFSDLRFQSRH--LFFGIFPIFFMSRNFFM 499
S+F L +F F FL F F FS L F S+ ++F FPI FF+
Sbjct: 111 SLFRCLLLFFFFLLF-FLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL 161
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -2
Query: 383 VICVK--LQDLSSDALFTDSPKPLSVLSRYSDSGVKTFICFFVITSNRSRFIAAISIWIS 210
++CV+ L SD SPK +S L S + + F ITS SR + S S
Sbjct: 95 IVCVRGVRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATS 154
Query: 209 FTSP-SISPNCFCNKMDPPVISTSS 138
+P S+S + +K V S S
Sbjct: 155 ANNPFSLSTDVNPSKPSSNVFSKPS 179
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 556 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 422
PPP ++ + D+ VQE + D++R + LS H ++F Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 598 PPIPLSIL*FAFSKPPPLFRYISDILYVQEF 506
PP+P+ +L + + PPPL I + + F
Sbjct: 286 PPMPIELLSYIINMPPPLLPQEPGIKWSKSF 316
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 205 VKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEER 360
+ ++Q+EI I D + +VFTP EY+ ++ G E K +R
Sbjct: 107 IDKLQLEIPVIGLHMSDEKLLEPPDVFTP--EYISISEEGVNEFNEKVGLDR 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,500
Number of Sequences: 5004
Number of extensions: 58178
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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