Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m01
         (744 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    26   1.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.4  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    26   1.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.5  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 549  GGGFENANQRIERGIGGNENDSEREK*TTTRIQIEVSTSTARSRR 683
            GGG     ++  RG GG ++DSE E+   +R + +   S  + +R
Sbjct: 951  GGGSRKRKEKARRGSGG-DSDSEEEEGEGSRKRKKKGASGGQKKR 994


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = +1

Query: 172  LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKAS 351
            L KQ+  +   + ++ +EI   +R+     +K ++N    E E  +S       ++ K +
Sbjct: 905  LGKQIDKLSANISKLTVEIKTSERNVQK--SKDKINSMEDEVEAAQS-------AIRKGN 955

Query: 352  EERSCNLTQITKLREELIRAK 414
            +ER+    +  KLREEL   K
Sbjct: 956  DERTQLEEEANKLREELEEMK 976


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 73  QLGSLKHFILMTQIWPYSSIQSEDVEITGGSILLQ-KQLGDMEGEVKEIQMEIAAIKRDR 249
           +L  LKH +  TQ++       +++E TGG      K LG + G +   ++    I  +R
Sbjct: 125 ELTELKHVLEKTQVFFSDKSNVQNLEATGGEAANDGKPLGFVAGVISRERI----IGFER 180

Query: 250 LDVMTKKQMNVFTPESEYLES-TDSGFGESVNK 345
           + +    + N+F  ++   ES  D   G+SV+K
Sbjct: 181 M-LWRVSRGNIFLRQATLEESLVDPKTGDSVHK 212


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 700 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 593
           P++   L    +LV  SIC+ VV   VHF   ++    P
Sbjct: 304 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHRMAP 342


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 700 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 593
           P++   L    +LV  SIC+ VV   VHF   ++    P
Sbjct: 304 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHRMAP 342


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,062
Number of Sequences: 2352
Number of extensions: 12417
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)