Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m01
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    33   0.16 
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    32   0.37 
U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical p...    30   2.0  
U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical p...    30   2.0  
U29378-6|AAA68726.2|  310|Caenorhabditis elegans Uncoordinated p...    28   6.1  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    28   6.1  
AF515600-1|AAM76039.1|  310|Caenorhabditis elegans UNC-98 protein.     28   6.1  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   6.1  

>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
            protein 5 protein.
          Length = 1198

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 13/200 (6%)
 Frame = +1

Query: 172  LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMT--KKQMNVFTPESEYLESTDSGFGESVNK 345
            L+K + DM   + E +     +K +    +   KK  N+    SE L        E+ NK
Sbjct: 829  LKKTITDMGMRLNEAKKSDEFLKSELSTALEEEKKSQNLADELSEELNGWRMRTKEAENK 888

Query: 346  ---ASEERSCNLTQITKLREELIRAKTLAXXXXXXXXXXXXXLKDLELKL--SEICHKEI 510
               AS E+S  L +I  L  E+ +  T                K++EL     +  +  I
Sbjct: 889  VEHASSEKSEMLERIVHLETEMEKLSTSEIAADYCSTKMTERKKEIELAKYREDFENAAI 948

Query: 511  PG----HKEYRKYTEKEVAA--LKTQIXXXXXXXXXXXXXXXXXNEQQQEYRLKYLXAQQ 672
             G     KE  + T+K + A  + + I                  EQQ EY        +
Sbjct: 949  VGLERISKEISELTKKTLKAKIIPSNISSIQLVCDELCRRLSREREQQHEYAKVMRDVNE 1008

Query: 673  EVEELKRQLDVIEFDTKQVS 732
            ++E+L+ + D +E + K +S
Sbjct: 1009 KIEKLQLEKDALEHELKMMS 1028


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 714 KFYNIQLSFQFFDFLLCX*ILQSVFLLLFIFLSQSHFRFLQFLFQFSDL 568
           K Y +     +  FL    I  SV L+  IF S SH  FL+FL   + L
Sbjct: 14  KIYEVINEIVYPIFLTITLIFHSVLLVFIIFFSPSHLNFLKFLLLTTSL 62


>U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical
           protein K02F3.12b protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 172 LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQ 273
           L  +L D++GE+ +I  +I+ ++R + ++  K+Q
Sbjct: 9   LSTELADLDGEIGQIDQQISQLRRKKSELTQKRQ 42


>U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical
           protein K02F3.12a protein.
          Length = 631

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 172 LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQ 273
           L  +L D++GE+ +I  +I+ ++R + ++  K+Q
Sbjct: 32  LSTELADLDGEIGQIDQQISQLRRKKSELTQKRQ 65


>U29378-6|AAA68726.2|  310|Caenorhabditis elegans Uncoordinated
           protein 98 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 404 INSSRSFVICVKLQDLSSDALFTDSPKPLSVLSRYSDSGVKTFIC 270
           I  S+  V+ V  QDL   A  T+  +P   L  Y+D   K +IC
Sbjct: 204 IKVSKKRVLPVSEQDLPQPAFVTEGYEPKHPLRVYNDVRSKPYIC 248


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYL-ESTDSGFGESVNKA 348
           +QK+L D+E E +++  EI +I R  +D   + +M+ F  +S  L +  D+ +      A
Sbjct: 417 IQKELADVEREDEKLNNEIQSISR-TID-ENRYEMDTFAAKSTSLKQEYDAAYVAQQTAA 474

Query: 349 SEERS 363
            EE++
Sbjct: 475 REEKA 479


>AF515600-1|AAM76039.1|  310|Caenorhabditis elegans UNC-98 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 404 INSSRSFVICVKLQDLSSDALFTDSPKPLSVLSRYSDSGVKTFIC 270
           I  S+  V+ V  QDL   A  T+  +P   L  Y+D   K +IC
Sbjct: 204 IKVSKKRVLPVSEQDLPQPAFVTEGYEPKHPLRVYNDVRSKPYIC 248


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 594 QFLFQFSDLRFQSRHLFFGIFPIFFMS 514
           QF F FS + + S H F GIF + F S
Sbjct: 238 QFTFIFSSILWSSVHCFDGIFTLIFNS 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,805
Number of Sequences: 27780
Number of extensions: 322263
Number of successful extensions: 1099
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)