Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20m01
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 700 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 593
           P++   L    +LV  SIC+ VV   VHF   ++    P
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 700 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 593
           P++   L    +LV  SIC+ VV   VHF   ++    P
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAP 343


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 724 AWCQIL*HPIVFSILRLLAVLVDTSICILVVVHFSLSESFSFPPI 590
           A+C+   HP VFS+L  L    +++I   +   FS    F+F  I
Sbjct: 33  AFCRNCIHPTVFSVLFWLG-YCNSAINPCIYALFSKDFRFAFKSI 76


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 724 AWCQIL*HPIVFSILRLLAVLVDTSICILVVVHFSLSESFSFPPI 590
           A+C+   HP VFS+L  L    +++I   +   FS    F+F  I
Sbjct: 481 AFCRNCIHPTVFSVLFWLG-YCNSAINPCIYALFSKDFRFAFKSI 524


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 475 ELKLSEICHKEIPGHKEYRKYTEK 546
           E  +S  C +  PG K++RK   K
Sbjct: 85  EASVSLFCPRAKPGEKKFRKVITK 108


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 734 SETCLVSNSITSNCL 690
           + TC +SNS T+ C+
Sbjct: 169 NNTCSISNSYTNGCV 183


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 241 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 405
           R R     +++ N +  E EY +  +     S +K   ERS     I+ L    I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYI 90


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 241 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 405
           R R     +++ N +  E EY +  +     S +K   ERS     I+ L    I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYI 90


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 241 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 405
           R R     +++ N +  E EY +  ++    S ++   ERS     I+ L  + I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRETSKERSRDRTERERSREPKIISSLSNKTI 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,899
Number of Sequences: 438
Number of extensions: 4568
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)