Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l21
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    28   1.1  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    26   5.7  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   10.0 

>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 123 TKYRKIRSQGSIHIQRALNFDDLNEAVRLHRSQRTSSKAFWKVVP-KDSCEVYRARKK 293
           +++RK+ +  + H +  +   D+  + +  R  R +   FWK +P +    VY+  K+
Sbjct: 247 SRFRKLEANNAFHRKPIIKNRDVVLSGKFLRFHRFNIPGFWKYLPTRQKMNVYKRNKR 304


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 403 NNARLHGDGQKEESVAVLQQFPLIVEFHSVRVAVTWITNKINIKICSFLYEFLFV 567
           N+    G+  K E+V   +QFP + EF+S   A+  ++++  ++ C  + E L V
Sbjct: 63  NSHENEGEKTKTETVPTRKQFPKVGEFNS---AIHGLSSESVLRTCFRVGEVLAV 114


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 168 RALNFDDLNEAVRLHRSQRTSSKAFWKVVPK 260
           R   FDDL   + ++   +T     W  VP+
Sbjct: 353 RRAGFDDLQHTLNIYEKSQTIEGKIWSCVPQ 383


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 FDDLNEAVRLHRSQRTSSKAFWKVVPKDSCEVYRAR 287
           FDDL    R HR  +      +K V KD+ E +  R
Sbjct: 861 FDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQR 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,074
Number of Sequences: 5004
Number of extensions: 39803
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)