Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l20
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   1.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   1.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   7.9  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 35  IREMLWQVLPTFVIFGVQFLTGFRAPLGDGQTQRRFK 145
           +  ++W +  + + FG+   +    PL D ++ RRF+
Sbjct: 308 LNSLVWNIKLSLINFGILSPSASSTPLTDSESYRRFE 344


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = -1

Query: 331 FRNCFNFVSKYNKSSCS----NRYLHQYKNE 251
           + N  N   KY K SCS     +YL ++ NE
Sbjct: 886 YENILNICEKYLKGSCSRLEFRKYLQKFNNE 916


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 117 PSGARKPVKNWTPNI-TNVGKTCQSIS 40
           PS    PVK+ +PN+  N  KT  S++
Sbjct: 201 PSNKSSPVKHVSPNVKNNSKKTASSVN 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,410
Number of Sequences: 5004
Number of extensions: 29460
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)